Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02340 ATGAATCTTCGAATTGAAAACACAAACACCATCGATTTGCTTCAGCTTTCTAAACCTTTCTTCCCTCCTAAAACCCTTTTCTCCCATTCCTTACCTCAACGCCTTCTTCTCAGAACTAGATTACGCCGTAAACACTCTTCCATCACTCTCCGCAACCTCACTGTAACTGCTTCTAATGCTCCCAATCCTCTTTCAAACTCAGCAACTCTCACCCAACAAGAGCAACAAGAAGAAGAAGAAGAAGAAGATGCTGAGTCTGCTCAGCTATTCGAGAGACTGAAAGAGGCCGAAAGGAAACGGGTGAATGAAATGGAAGAGTTTGAGAAGAAGGCAAATATGCAGTTAGAGAGGCAGCTTGTGATGGCTTCTTCATGGAGCCGAGCTTTGCTGACCTTGCGCGGAAAGCTGAAGGGAACTGAGTGGGATCCTGAAAACTCACACAGGATAGACTTCAGCGAGTTTATGAGACTTCTTGACTCTAATAATGTCCAGTTTATGGAGTACTCCAATTATGGCCAAACAATATCAGTGATTCTACCATACTACAAAAATGGGAAAACACCAGGGACTGAAGGTAATCCTAAGGATATTGTTTTCCGCCGGCATGTGGTGGATCGAATGCCAATTGATTGTTGGAATGATGTTTGGAGAAAACTGCATCAGCAAATTGTAAATGTTGATGTCATTAATGTGGATACAGTACCTTTTGAAGTTTACACAACTGTCGCAACTGCAGTCATATGGTCTATGCGTCTTGCTGTGGCTGTTGGGTTTTACGTGTGGATTGATAATTTGATGAGACCAATATATTCAAAGTTGATTCCTTGTGATTTAGGATCTCCTACCCAGCAAACTAAGCAGCCACTCAAACGCCAAGCACTTGGATCGCTGGGCAAAAGTCGGGCTAAATTTATATCTGCAGAAGAAAGAACTGGTGTCACTTTTGATGATTTTGCTGGCCAGGAATATATAAAGAGGGAATTGCAAGAGATTGTACGAATTTTAAAGAATGATGAGGAGTTTCAAGACAAAGGAATTTATTGTCCAAAAGGTGTGCTTCTCCACGGACCTCCAGGAACGGGTAAAACTCTACTGGCTAAAGCCATCGCTGGGGAAGCAGGGTTGCCTTTTTTTGCGGCAAATGGCACAGATTTTGTAGAGATGTTTGTAGGGGTTGCTGCATCACGTGTTAAGGATCTTTTTGCTAGTGCAAGATCATTTTCACCTTCTATCATATTTATTGATGAGATAGATGCTATTGGTAGCAAGCGTGGAGGACCTGACATTGGTGGAGGTCGTTTTGACAAGATCATTCGAGTTGGTTTGCCATCAAAGGATGGAAGATTTGCCATTTTGAAGGTGCATGCTAGGAATAAATTCTTTCGCTCAGAGGAGGAAAAGGAGATTCTTCTTAGGGAAATTGCAGAGCTTACAGAAGATTTTACTGGAGCAGAGCTACAAAATATACTGAATGAAGCTGGAATTTTGACAGCCAGGAAGGATTTGGATTACATTGGGCGAGATGAGCTACTTGAGGCATTAAAGAGGCAAAAAGGAACTTTTGAAACAGGGCAAGAGGATAGTGCTGAAATTCCTGAAGAATTGAAGCTTAGACTGGCATACAGAGAAGCGGCAGTTGCTATTCTTGCATGTTATTATCCTGAACCACACCGCCCTTTTGATGAGACTAATATAAACTCAATCCAGAGCCGGCCAAATATGAGTTATTCTGAGACTGCTGGCCAAGTTTTTGCGAGGAAGTCAGATTATGTAAATTCTATTATCCGTGCATGTGCTCCAAGAATAATTGAGGAGGAGATGTTTGGAATTGACAACTTATGTTGGATCTCTGCAAAGTCAACGTTAGAAGCTTCAAGGCGTGCTGAGTTTTTAATTTTACAGACAGGAATGACAGCATTTGGGAAAGCATACTTCAAAAACGAAAGTGATCTTGTACCTAATCTTGCAATGAAGCTTGAAGCGCTCCGAGATGAGTATATGCGTTATGCTACAGAAAGGTGTTCATCCGTGCTCAGAGAATACCAGGAAGCAGTTGAGACAATCACAGATGTTTTGCTTGAAAAGGGGCAAATCAAAGCTGAGGAGATATGGGACATTTATAAGAGTGCTCCTCGTCGAACTCAGCCTCCTGTGAGTCCAGTTGATGAATATGGAGCACTGATTTATGCTGGACGATGGGGAATCCATGGGATCAGCCTTCCGGGAAGAGTTACATTCGCACCTGGCAATGCCGGGTTTGCGACCTTTGGAGCTCCTCGCCCAACCGAGACACAAATTGTGAGCGACGAAACTTGGAAGCTAGTAGATGGTATATGGGACAAAAAGATTCAAGATATTAGAGATGAATCTACAAGGGTGATCGAAGAAGAGAAAGAAAGGCCACAACTTTTGATGGCAAGCCATTTCCTTTGA 2433 0.4262 MNLRIENTNTIDLLQLSKPFFPPKTLFSHSLPQRLLLRTRLRRKHSSITLRNLTVTASNAPNPLSNSATLTQQEQQEEEEEEDAESAQLFERLKEAERKRVNEMEEFEKKANMQLERQLVMASSWSRALLTLRGKLKGTEWDPENSHRIDFSEFMRLLDSNNVQFMEYSNYGQTISVILPYYKNGKTPGTEGNPKDIVFRRHVVDRMPIDCWNDVWRKLHQQIVNVDVINVDTVPFEVYTTVATAVIWSMRLAVAVGFYVWIDNLMRPIYSKLIPCDLGSPTQQTKQPLKRQALGSLGKSRAKFISAEERTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFASARSFSPSIIFIDEIDAIGSKRGGPDIGGGRFDKIIRVGLPSKDGRFAILKVHARNKFFRSEEEKEILLREIAELTEDFTGAELQNILNEAGILTARKDLDYIGRDELLEALKRQKGTFETGQEDSAEIPEELKLRLAYREAAVAILACYYPEPHRPFDETNINSIQSRPNMSYSETAGQVFARKSDYVNSIIRACAPRIIEEEMFGIDNLCWISAKSTLEASRRAEFLILQTGMTAFGKAYFKNESDLVPNLAMKLEALRDEYMRYATERCSSVLREYQEAVETITDVLLEKGQIKAEEIWDIYKSAPRRTQPPVSPVDEYGALIYAGRWGIHGISLPGRVTFAPGNAGFATFGAPRPTETQIVSDETWKLVDGIWDKKIQDIRDESTRVIEEEKERPQLLMASHFL 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02340 810 Pfam AAA+ lid domain 471 511 IPR041569 -
Aip10g02340 810 SUPERFAMILY FtsH protease domain-like 532 714 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aip10g02340 810 Coils Coil 67 113 - -
Aip10g02340 810 CDD AAA 319 421 - -
Aip10g02340 810 Pfam ATPase family associated with various cellular activities (AAA) 352 424 IPR003959 GO:0005524|GO:0016887
Aip10g02340 810 Gene3D - 300 447 IPR027417 -
Aip10g02340 810 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 4, CHLOROPLASTIC-RELATED 432 779 - -
Aip10g02340 810 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 4, CHLOROPLASTIC-RELATED 57 432 - -
Aip10g02340 810 Coils Coil 460 487 - -
Aip10g02340 810 SMART AAA_5 348 549 IPR003593 -
Aip10g02340 810 MobiDBLite consensus disorder prediction 57 87 - -
Aip10g02340 810 MobiDBLite consensus disorder prediction 57 73 - -
Aip10g02340 810 PANTHER METALLOPROTEASE M41 FTSH 432 779 - -
Aip10g02340 810 PANTHER METALLOPROTEASE M41 FTSH 57 432 - -
Aip10g02340 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 516 IPR027417 -
Aip10g02340 810 Gene3D Peptidase M41 525 714 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aip10g02340 810 Gene3D - 448 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02340 Aip-Chr10 105988490 105993547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02340 309 706 Miscellaneous Gene Families AT5G53170 33.036 2.55e-49 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02340 - - ahf:112783256 1546.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02340 10 105988490 105993547 Aip10g02340 10 105988490 105993547 ECH