Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02328 ATGTATGTTTCACATTGGTATTTAAGGGGATTTGAATATAAGGAGGATATGCTGCTCTCTGATGATGGTGGAGAAGATGAAGTGTTCTTTGATTCTCTGGATTGCTTGTCACCACCTCACGATGATGATGATGATGAGTTTGGTTATGAGGTTTGGATGAATGAGCCTCTTTGTGTGGAGGAAAGGAGGGAAAGGTTTCTTCAGAGGATGGGTATGGTTAGTGTTAGTGTCTCTTCTTCACACAATATGAATGATTTTGATGATGTCTCATCTTCAAATGCTTCCATTTCCTGTGCTCCTACTTCTGAAGACGTAGCATTGTTTGATGAAATTAAGAAACGACCGGAGAATTCACCGGTTACTTTGGCCAAACAAGAGCTTGGAGAATTTGGAACTTGTACAAGTAAAAAGAAGAAGAATTGGTGGAACCGCATTGCATATGGAATGAAAATTGGATCAAGATTGGATAAGGGAAGTACTAAAATTACAAGAAGGATCAATGTGAATCAGAATAAAAAGAGGTGGATGGAATTGAGTGCATTGTTTACTGGACAGAATATCAGAGCTCACGATGGCCTAATTTGGACCATGAAATTTAGTCCCAGTGGCCGCTATCTTGCTAGTGGAGGCCAAGACGGCGTTGTTCGCATTTGGCGCGTCGTATCGACCGATGCATCCAGTCTTTGCTTCAATGGAGTTAAGAGTGCTGACAGCAAAGTGAAACCACACAACTCTGCTCCTAAAACTCAATCCTTTGTTGTGTTCCCAAACAGGATTTTCCAAATTGAGGAATCACCAATGCAAGAATTTTGTGGTCATTCCAGTGATGTCTTGGATCTGGCTTGGTCAAGTTCGGATATTCTGCTTTCATCTTCAATGGATAGAACTGTTCGCATGTGGCAGATTGGTTGTAATCAATGTCTAAATGTTTTCCATCACACAGATTATGTGACATGCATTCAATTCAACCCTGTTGATGAAAATTACTTCATCAGTGGCTCCATAGATGGTAAAGTTCGAATATGGGGAATGCGTGAAGAGCGAGTGGTTGACTGGGCAGACATTCGAGATGTCATAACTGCCATAAGTTACCAACCAAATGGAAAGGGATTTGTTGTTGGTTCCCTTACCGGCATATGTCGCTTTTATGTTGCTTCGGGCAAACATTTCCATCTTGAGGCACAGATTAATGTTAGCGGAAAGAAGAGAACATCAACATCTCGCAACAAGATCACGGGAATTCAGTTTTCCAAGAAAAACCACCAAAGAGTCATGATCACATCAGAAGATTCCAAAGTCCGAATATTGGAAGGCATGGAACTTGTTCAGATATTTAAAGGACGTCGAAAATCTGGAAGTCAGACATCAGGTGCATTTATGTCGAGCGAGAAACATATAATTTCAGTTGGAGATGACTCTCGTGTATATATTTGGAACTACAAAGACTTTGGAAATGCTTCATCCAAGCATGCAAAATCGAACAATTCCTGTGAGTACTTTTGCTCCAAGGGTGTTACTGTTGCAATACCTTGGTCAGGAATGAGCACAGAAAGTAGCAACTCCTACAACAATTTTGCACATTGTTTCCCAGAAACTCAACACCAGCTAGAAGCTGCTCCCATGGTAGTTGGTTCTTCGGAACGTTTTTCCTTAGGTAGTTGGTTCTCCATTGACGGCACGTGCCGCGGTTCCATGACATGGCCAGAGGAGAAGCTCCCTAGTTGGGATTTACCTCTTGCGGAGCACGATGAATTCCATCACAGCCGGCCGCAGCTACGCCCCAAGGAACCTTGTAATGACGGCTGTGTGTCAGAAACATGGGGACTATCGATAGTTGCGGCCGGTTGTGATGGGACCATCAAGACATTCCACAACTTTGGATTGCCTGTTAGGCTCTAG 1899 0.4276 MYVSHWYLRGFEYKEDMLLSDDGGEDEVFFDSLDCLSPPHDDDDDEFGYEVWMNEPLCVEERRERFLQRMGMVSVSVSSSHNMNDFDDVSSSNASISCAPTSEDVALFDEIKKRPENSPVTLAKQELGEFGTCTSKKKKNWWNRIAYGMKIGSRLDKGSTKITRRINVNQNKKRWMELSALFTGQNIRAHDGLIWTMKFSPSGRYLASGGQDGVVRIWRVVSTDASSLCFNGVKSADSKVKPHNSAPKTQSFVVFPNRIFQIEESPMQEFCGHSSDVLDLAWSSSDILLSSSMDRTVRMWQIGCNQCLNVFHHTDYVTCIQFNPVDENYFISGSIDGKVRIWGMREERVVDWADIRDVITAISYQPNGKGFVVGSLTGICRFYVASGKHFHLEAQINVSGKKRTSTSRNKITGIQFSKKNHQRVMITSEDSKVRILEGMELVQIFKGRRKSGSQTSGAFMSSEKHIISVGDDSRVYIWNYKDFGNASSKHAKSNNSCEYFCSKGVTVAIPWSGMSTESSNSYNNFAHCFPETQHQLEAAPMVVGSSERFSLGSWFSIDGTCRGSMTWPEEKLPSWDLPLAEHDEFHHSRPQLRPKEPCNDGCVSETWGLSIVAAGCDGTIKTFHNFGLPVRL 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02328 632 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 302 - -
Aip10g02328 632 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 123 632 - -
Aip10g02328 632 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 21 95 - -
Aip10g02328 632 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Aip10g02328 632 SMART WD40_4 180 219 IPR001680 GO:0005515
Aip10g02328 632 SMART WD40_4 345 384 IPR001680 GO:0005515
Aip10g02328 632 SMART WD40_4 438 479 IPR001680 GO:0005515
Aip10g02328 632 SMART WD40_4 578 624 IPR001680 GO:0005515
Aip10g02328 632 SMART WD40_4 398 437 IPR001680 GO:0005515
Aip10g02328 632 SMART WD40_4 304 343 IPR001680 GO:0005515
Aip10g02328 632 SMART WD40_4 263 301 IPR001680 GO:0005515
Aip10g02328 632 Pfam WD domain, G-beta repeat 187 218 IPR001680 GO:0005515
Aip10g02328 632 Pfam WD domain, G-beta repeat 265 300 IPR001680 GO:0005515
Aip10g02328 632 Pfam WD domain, G-beta repeat 306 342 IPR001680 GO:0005515
Aip10g02328 632 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 220 - -
Aip10g02328 632 SUPERFAMILY WD40 repeat-like 185 622 IPR036322 GO:0005515
Aip10g02328 632 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 352 IPR001680 GO:0005515
Aip10g02328 632 Gene3D - 178 514 IPR015943 GO:0005515
Aip10g02328 632 PANTHER WD REPEAT DOMAIN 44 21 95 IPR040324 -
Aip10g02328 632 PANTHER WD REPEAT DOMAIN 44 123 632 IPR040324 -
Aip10g02328 632 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 310 IPR001680 GO:0005515
Aip10g02328 632 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Aip10g02328 632 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Aip10g02328 632 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Aip10g02328 632 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02328 Aip-Chr10 105327161 105330747 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02328 171 383 Miscellaneous Gene Families AT5G08390 21.101 2.10e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02328 K20241 - gmx:100801576 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02328 10 105327161 105330747 Aip10g02328 10 105327161 105330747 ECH