Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02271 ATGGTCATGGGAAACTCGGGGAATTTAGATGCGGCCATAGAGAAGTTGTTGAATGAAGAGAAGCATGGGAGGCTCGCCGGAGACGTTGCCGTCACAAGGAAGGCCGTCACCGATATTCTCCGGCTCTGCTTTGAGGCGCGAGACTGGAAAACTCTCAACGACCAGATTGTTCTCTTGTCCAAACGACGTGGTCAGCTTAAGCAGGCTGTCACAGTAATGGTCCAGCAGGCAATGCAATATATTGATGAAACACCAGATATTGAAACACGTATAGAACTCATCAAAACCTTGAACAGTGTATCTGCAGGGAAGATATATGTTGAGATTGAGAGAGCTCGGTTGGTCAAGAAACTTGCCAAGATTAAGGAGGAACAAGGGCTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCCATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAAGTTCGTTTGTGCCTAGATCGTCAAGATTATGTTCGTGCACAAATACTTTCAAGAAAAATTAGTACAAGAGTATTTGATGCTGATGCTTCGAAGGAAAAGAAAAAACCTAAAGAAGGTGATAGTGTTGTTGAAGAAGCTCCTGCTGATATACCATCTCTGCCAGAGTTGAAGCGGATCTATTACGAATTAATGATTCGGTATTATTCCCACAAAAATGATTATCTTGAAATTTGCCGTTGCTACAAGGCAATATACGAAATTACATCTGTCAAAGAAAATCCTGCCGAGTGGATTCCAATCCTGAGGAAAATATGTTGGCACTTGGTTCTAGCACCACATGATCCAATGCAATCAAGTCTTCTCAATTCCACCTTGGAGGATAAGAATCTGTCTGAGATTCCAAACTTTAAATTACTGTTGAAACAGTTGGTCACCATGGAGGTTATTCAATGGACAAGCCTTTGGGATGCATACAAGAATGAGTTTGAAAATGAGAAGAATCTTGGAAAGTCTTTGGGTGAAAAAGCAGCAGAAGATCTGAAGGAAAGAATAATTGAACATAATATTATTGTCGTATCAAAGTACTATGCAAGGATTACTTTGAAGAGACTTGCAGAGCTTTTGTGTCTCAGTGTTCAGGAAGCTGAAAAGCATCTGTCAGACATGGTTGTGTCCAAGGCACTGGTTGCAAAGATTGATAGGCCCATCGGAATAGTTTGTTTCCAGACTGCTAAGGATAGCAATGACATTCTCAACTCATGGGCAGCAAACTTGGAGAAATTGCTTGATCTTGTGGAGAAAAGTTGTCATCAGATACACAAAGAAACTATGATTCATAAAGCTGCTTTGAAGGCTTAA 1332 0.4092 MVMGNSGNLDAAIEKLLNEEKHGRLAGDVAVTRKAVTDILRLCFEARDWKTLNDQIVLLSKRRGQLKQAVTVMVQQAMQYIDETPDIETRIELIKTLNSVSAGKIYVEIERARLVKKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISTRVFDADASKEKKKPKEGDSVVEEAPADIPSLPELKRIYYELMIRYYSHKNDYLEICRCYKAIYEITSVKENPAEWIPILRKICWHLVLAPHDPMQSSLLNSTLEDKNLSEIPNFKLLLKQLVTMEVIQWTSLWDAYKNEFENEKNLGKSLGEKAAEDLKERIIEHNIIVVSKYYARITLKRLAELLCLSVQEAEKHLSDMVVSKALVAKIDRPIGIVCFQTAKDSNDILNSWAANLEKLLDLVEKSCHQIHKETMIHKAALKA 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02271 443 Pfam 26S proteasome regulatory subunit RPN5 C-terminal domain 406 438 IPR040896 -
Aip10g02271 443 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 333 419 - -
Aip10g02271 443 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 5 443 IPR040134 -
Aip10g02271 443 SMART PINT_4 333 419 IPR000717 -
Aip10g02271 443 Gene3D - 329 408 IPR036388 -
Aip10g02271 443 Pfam PCI domain 292 400 IPR000717 -
Aip10g02271 443 ProSiteProfiles PCI domain profile. 227 404 IPR000717 -
Aip10g02271 443 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12 HOMOLOG A-LIKE 5 443 - -
Aip10g02271 443 SUPERFAMILY "Winged helix" DNA-binding domain 331 409 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02271 Aip-Chr10 101817098 101823622 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02271 K03035 - gmx:100793755 798.505