Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02200 ATGGCGAAGCAGAAACAGAGCAGCACTTATTTGCTTTACTCGGCAATTCTTCTATTCACCATCTTCTGTGTCTCCTCTGTTTTGGTTTCAGCTAGAGTTCATCCTATCTTGCAGAGCTTTAACCAGAAACCCATTTTCAGATCCAACTTTCACTCCATTTACGATACCTCCAACTATGGCACCTTTCAACTCAGTAATGGCTTGGCCAAAACGCCTCAAATGGGATGGAATAGCTGGAACTTCTTTGCATGCAATATCAATGAGACCGTCATTAAGGAAACCGCTGATGCACTGATATCGACGGGATTAAGGGATTTGGGTTACGTGTACGTCAACATAGATGATTGCTGGTCTTCTGTGACAAGAAATTTTAAGGGTCAACTGGTACCTGACGAAAAAACATTCCCATCAGGAATCAAAGCTCTTGCAGATTATGATGATGCAGCTTTGTTTGCCTCTTGGGGTATAGATTACCTGAAATATGACAATTGTTACAATCTGGGCATCCCACCCAAAAAAAGATATCCACCAATGCGTGATGCTCTCAATGCTACTGGACGTACAATTTTCTATTCACTTTGTGAATGGGGTGTTGATGACCCTGCCTTATGGGCTGGCACCGTTGGTAACAGTTGGCGCACAACTGAAGACATCAATGATACTTGGGCAAGTATGTCAAACATTGCTGATCTCAATGACAAGTGGGCCGCATATGCTGGTCCTGGCGGATGGAATGACCCAGATATGTTGGAAGTTGGAAATGGCGGCATGACTTACCAAGAATACCGTGCTCACTTCAGCATCTGGGCTTTAATGAAGGCTCCTCTATTGATTGGCTGTGATGTAAGAAATATGACTGTTGAGACAATTGAGATTTTGACCAACAAAGAAGTCATTGACATAAATCAAGATCCACTTGGTGTCCAAGGAAGGAAAGTTTATGTTTCTGGAAAAGATGGTTGCAATCAGGTTTGGGCTGGTCCTTTATCAGGAGACCGGTTGGCAGTGGCACTCTGGAACCGGTGCTCAAATGCAACTACGATAACTGCTTCATGGAATACGATTGGACTGGAATCTGGAATTCGAGTATCTGTAAGGGATTTATGGCAGCACAACACACTAACATCAGATGCAGTGTCATCATTCAGTGCTCATGTTGATGCTCATGATTGTCACTTTTACATTTTCACTCCTTCTCCTTCAGTGTCTCACTCTGTAGAGTAG 1224 0.433 MAKQKQSSTYLLYSAILLFTIFCVSSVLVSARVHPILQSFNQKPIFRSNFHSIYDTSNYGTFQLSNGLAKTPQMGWNSWNFFACNINETVIKETADALISTGLRDLGYVYVNIDDCWSSVTRNFKGQLVPDEKTFPSGIKALADYDDAALFASWGIDYLKYDNCYNLGIPPKKRYPPMRDALNATGRTIFYSLCEWGVDDPALWAGTVGNSWRTTEDINDTWASMSNIADLNDKWAAYAGPGGWNDPDMLEVGNGGMTYQEYRAHFSIWALMKAPLLIGCDVRNMTVETIEILTNKEVIDINQDPLGVQGRKVYVSGKDGCNQVWAGPLSGDRLAVALWNRCSNATTITASWNTIGLESGIRVSVRDLWQHNTLTSDAVSSFSAHVDAHDCHFYIFTPSPSVSHSVE 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02200 407 Gene3D - 307 399 IPR013780 -
Aip10g02200 407 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 53 145 IPR002241 GO:0004553|GO:0005975
Aip10g02200 407 Pfam Alpha galactosidase A 71 145 IPR002241 GO:0004553|GO:0005975
Aip10g02200 407 Pfam Alpha galactosidase A 147 304 IPR002241 GO:0004553|GO:0005975
Aip10g02200 407 PANTHER ALPHA-GALACTOSIDASE 146 398 - -
Aip10g02200 407 PANTHER ALPHA-GALACTOSIDASE 53 145 - -
Aip10g02200 407 PRINTS Glycosyl hydrolase family 27 signature 66 85 IPR002241 GO:0004553|GO:0005975
Aip10g02200 407 PRINTS Glycosyl hydrolase family 27 signature 102 117 IPR002241 GO:0004553|GO:0005975
Aip10g02200 407 ProSitePatterns Alpha-galactosidase signature. 107 123 IPR000111 GO:0004553|GO:0005975
Aip10g02200 407 Gene3D Aldolase class I 146 306 IPR013785 -
Aip10g02200 407 SUPERFAMILY Glycosyl hydrolase domain 316 397 - -
Aip10g02200 407 CDD GH27 72 304 IPR002241 GO:0004553|GO:0005975
Aip10g02200 407 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 146 398 IPR002241 GO:0004553|GO:0005975
Aip10g02200 407 Pfam Alpha galactosidase C-terminal beta sandwich domain 320 395 IPR041233 -
Aip10g02200 407 SUPERFAMILY (Trans)glycosidases 64 305 IPR017853 -
Aip10g02200 407 Gene3D Aldolase class I 64 145 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02200 Aip-Chr10 98431913 98437564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02200 1 405 Glycoside Hydrolase AT3G56310 66.019 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02200 K07407 - gmx:100784072 661.759