Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01920 ATGTCAACAAGCTTTCTTGATTTCCAATACAGCCTCTCAAAGAGGAAGTACCTGAGGAAGCCGTCGCGGATGTTCTCGAGGGACAAACAGAACTCGGGTTTGAAGGCTGTTTTCCAGCCTAATGTAGATGAGATGAAGCAGGTGTTTGACAAATTTGATTCCAACAGAGATGGGAAAATTTCTCAGCAGGAGTACAAGGCCACCCTGAGATCTCTGGGCATGGAGAACACGGTTCAAGAGGTGCCAAATATTTTCCGGGTGGTCGATCTGGATGGAGATGGATACATCAACTTCAAGGAGTTCATGGAGGCTCAGAAGATGGGTGGTGGGGTTAGGACGATTGATATACAGAGCGCATTCCGGACATTCGACAAGAATGGTGATGGGAAGATAAGTGCAGAAGAAATTCAAGAGATGCTGAGGAGGCTGGGAGAAAGGTGCAGCCTTCAAGACTGCCAGAAGATGGTGAAAGCGGTGGACACTGATGGAGATGGCATGGTCAACATGGACGAGTTCATGACCATGATGACTCAGTGTAGGAGAGTTGCTTAG 552 0.4783 MSTSFLDFQYSLSKRKYLRKPSRMFSRDKQNSGLKAVFQPNVDEMKQVFDKFDSNRDGKISQQEYKATLRSLGMENTVQEVPNIFRVVDLDGDGYINFKEFMEAQKMGGGVRTIDIQSAFRTFDKNGDGKISAEEIQEMLRRLGERCSLQDCQKMVKAVDTDGDGMVNMDEFMTMMTQCRRVA 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01920 183 Gene3D - 112 182 - -
Aip10g01920 183 ProSitePatterns EF-hand calcium-binding domain. 160 172 IPR018247 -
Aip10g01920 183 ProSiteProfiles EF-hand calcium-binding domain profile. 111 146 IPR002048 GO:0005509
Aip10g01920 183 ProSitePatterns EF-hand calcium-binding domain. 124 136 IPR018247 -
Aip10g01920 183 Gene3D - 6 108 - -
Aip10g01920 183 PANTHER CALCIUM-BINDING PROTEIN CML34-RELATED 2 180 - -
Aip10g01920 183 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 2 180 - -
Aip10g01920 183 SUPERFAMILY EF-hand 42 178 IPR011992 -
Aip10g01920 183 SMART efh_1 80 108 IPR002048 GO:0005509
Aip10g01920 183 SMART efh_1 151 179 IPR002048 GO:0005509
Aip10g01920 183 SMART efh_1 115 143 IPR002048 GO:0005509
Aip10g01920 183 SMART efh_1 44 72 IPR002048 GO:0005509
Aip10g01920 183 Pfam EF-hand domain pair 116 176 IPR002048 GO:0005509
Aip10g01920 183 Pfam EF-hand domain pair 44 104 IPR002048 GO:0005509
Aip10g01920 183 ProSiteProfiles EF-hand calcium-binding domain profile. 40 75 IPR002048 GO:0005509
Aip10g01920 183 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
Aip10g01920 183 ProSiteProfiles EF-hand calcium-binding domain profile. 76 110 IPR002048 GO:0005509
Aip10g01920 183 ProSitePatterns EF-hand calcium-binding domain. 53 65 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01920 Aip-Chr10 65639241 65640398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01920 2 177 EF-hand Containing Proteins AT2G15680 60.221 1.84e-80 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01920 K13448 - gmx:100803158 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g01920 10 65639241 65640398 Aip10g01920 10 65639241 65640398 ECH