Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01527 ATGGAAACCACCGAACAGCCAAACCCTAACAACCACCCCTCCCCCAATGCCGACCCCGAACAACAACAAAGCCACTTCACCGACGGAGACGACGACGAAGAAGAATTTGAAGAAGAAGAAGAGGAAGAAGACGGAGACGACGTCGTTTCGCGTGACTCCCAGTCCCCAGTGTCGCAGCTTCGCGAGCAGCGCTTCAAGATGGAGACGCTCTCGCGGCGGCTGTCATCGGAGCTTGTACCAATCAGAGTCCACGACATTGTGATCCGTGGCAACGCGAAGACGAAGGATTGGGTGATCCAAGCGGAGCTCGAGGGGATCGAGAACGCCGCCACCGTGCAGGACCTGATTCGCGCCTCGCAGGTCGCACTTGCAAGGCTCCAGGGGCTCGGAATCTTCGATTCCACCAACCTCCGCCTTGAGCCTGGGCCGCCGGAGCTCCCTCACACAGCCAACATCGTCGTTGATGTCGTCGAAGCCGCCAGCAAAGTCAGTGGAGAATTCGGCGTTTACACCAAACCCTCGACTAGTTCCTGGACTAGTGAAGGTACTCTTAAGTACAAAAACTTGTTAGGTTATGGTGATCTATGGGATGCTTCTGTGGCCTACGGTGCTAACCAAACAACGGAGGTGAGTATAGGGGTCTATGCCCCTAGACTTAAAGGATTGTTAACTCCTCTTGTAGCACGACTATCCTTGCTTTCCCAAGATTGGCAAGAGTTTTCTTCATACAAAGAGCAATTGTTGGGCATGTCTCTTGGCTTAATATCAACACGGCACCATGACTTAGTGTACACTCTTGGATGGCGTACCTTAACAGATCCGTCACAAATGTCATCCAGGTCTATAAGGAGACAACTTGGCCATGGTTTGCTGTCATCTCTGAAGTATACATTTAAATTTGACAGGAGAAATTCACCAATCAGGCCTACCAGAGGATATGCTTTTCTTTCTACCACTCACTTTGGTGGCCTCACACCAGATGAACGAAGCTTGCGGTATATTCGTCAGGAGTTCGATGTTCGTTGTGCAGTCCCCTTTGGGTTTTATAATACAGCACTGAATCTTGGCATTTCTGCCGGTGCTGTTTTTCCATGGGGGCCTGGTTTCTTGAACAAGCCATCTCCCCTTCCTGAAAGGTTTTATTTGGGTGGTGATTTCTCTCCAGTTTGCACCCTTGGAGGGCCAGTAACATTGTGGGGATTCAAAACTCGGGGATTAGGTCCTACTGAACCAAGAAGGCAAAGCAGAGATGGGGTCGGCGATGACAATGATGATTCATCTAGATGGGACTTCGTTGGAGGGGATCTTGCTGTTAGTGCTTTTGCAGACCTATCTTTTGATCTTCCAATCAAGTGGTTGAGAGAACACGGAATCCATGGTCATGTGTTTGCTGGTGCTGGGAATATTACAAAATTAACTCAGAACGAATATAAGCTGTTCTCTCCTCGCAAGTTCTTAGAATCCTTTCGGACATCAGTGGGCTGTGGATTTGTTATTCCTACTAGACTTTTCCGCTTAGAGGGTAACTTCTACCATATTCTCCGGCAGGATGAGCATGATCGTGGAAAAACTGGATTTAGATTCAGTTTTTCGTCTCCTTCGTAG 1605 0.491 METTEQPNPNNHPSPNADPEQQQSHFTDGDDDEEEFEEEEEEEDGDDVVSRDSQSPVSQLREQRFKMETLSRRLSSELVPIRVHDIVIRGNAKTKDWVIQAELEGIENAATVQDLIRASQVALARLQGLGIFDSTNLRLEPGPPELPHTANIVVDVVEAASKVSGEFGVYTKPSTSSWTSEGTLKYKNLLGYGDLWDASVAYGANQTTEVSIGVYAPRLKGLLTPLVARLSLLSQDWQEFSSYKEQLLGMSLGLISTRHHDLVYTLGWRTLTDPSQMSSRSIRRQLGHGLLSSLKYTFKFDRRNSPIRPTRGYAFLSTTHFGGLTPDERSLRYIRQEFDVRCAVPFGFYNTALNLGISAGAVFPWGPGFLNKPSPLPERFYLGGDFSPVCTLGGPVTLWGFKTRGLGPTEPRRQSRDGVGDDNDDSSRWDFVGGDLAVSAFADLSFDLPIKWLREHGIHGHVFAGAGNITKLTQNEYKLFSPRKFLESFRTSVGCGFVIPTRLFRLEGNFYHILRQDEHDRGKTGFRFSFSSPS 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01527 534 Pfam Omp85 superfamily domain 188 531 IPR000184 GO:0019867
Aip10g01527 534 MobiDBLite consensus disorder prediction 407 426 - -
Aip10g01527 534 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 171 532 - -
Aip10g01527 534 Gene3D membrane protein fhac 80 159 - -
Aip10g01527 534 Pfam Surface antigen variable number repeat 81 158 IPR010827 GO:0019867
Aip10g01527 534 MobiDBLite consensus disorder prediction 27 48 - -
Aip10g01527 534 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 8 532 IPR039910 -
Aip10g01527 534 MobiDBLite consensus disorder prediction 1 23 - -
Aip10g01527 534 PANTHER OUTER MEMBRANE OMP85 FAMILY PROTEIN 8 532 - -
Aip10g01527 534 MobiDBLite consensus disorder prediction 409 426 - -
Aip10g01527 534 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01527 Aip-Chr10 28493343 28499782 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01527 K07277 - gmx:100785408 887.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g01527 10 28493343 28499782 Aip10g01527 10 28493343 28499782 ECH
Aip10g01527 10 28493343 28499782 Aip07g00822 07 9020468 9024243 PCT