Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01337 ATGTCGTCGTCGAAGTACCCCATACTTGACAACCGGCCGATTCATCAGTGGAAGGTTACAGAACTGAAAGAGGAGCTGAAGAGGAGGAGATTAACCACCAAGGGTTTGAAGGACGAGTTGGTGAGGCGATTGGATGAAGCTCTTCGTGCTGAGATGGAGGCTGATGAGTCTGCCTCGAAGGATGATGCAAACGGTTTTGAGGTCCATGCGGGTGGTGGCAGTGAAGATTCACAAACGGTTACTGCGGATGTTGAAGTGGTTCAAACAATTGAAGAGGAAAGTGTCCAAACCATGGAAAAGGGGAATAATGAAAATGTTGAGCCAACTCAAGAAGTTGAAACTGTGGAGAAGGGGAATACTGTTGTAGTTGAGCCAATTGACACAGAGAGCACAGAGAAAGTTCAGGAGGATGTGGATGACGAGAGCAAGAAGAATGACAAGCAGGGTGGTGTTGCCAACCCAGTTGATATTAGTAGTGTGTCAGCTGTGGATGAAGATATCGAACAAGCTGGTTTGCCAGCCGGTGTAGATCCTGAAAATGTGAAAGATGAGCAAAGTGCTCATGGCTCTACTGTGGAGACATCCGATAAAATCACGGAGACTGTATCAACTGAAGTAGTGGTCAGTGATCAGCATACTCATAGTGAAGTAAAGAGTAACAAGGATTTGGCAATCAAGGTGGAGAATGAGGAATCAAAGGCGCAGCTGGACAATGAGGTCCCAAAGCCCCAGGTGGAGTGTGACACAAAGCCCCAACTGGAGTGTGACACAAAGCCCCCGTCTGAGGATCTCATGCCCAACACTTCTGTTCCAGAAAACCAGAACAAGATATTGTTAGGCCGGAGATGGTGGAAGAACCATCATCCAGAAAAGATGTACCTCAATGATGATGTGGGGTATCCAGAAAAGTTAAACCTAGATAGAAGTTCTGGTGATGATTCCATGGAAGAGGATTTACCTGAGAGTAAGCATGTTGATTCTAAGTTTGATGTTGATGAAAGAGATAATGTGGAGAATATTGAGGTGTCCATTGTGAAGGAGGAAAGTAAAACTATAGTCGTGAAGAATGATCTATCTGCAGGGAAAAGTGATACTCATCAGGACATTGACATTAGTCCTGTTGCCTTGGCTGAGAAACGAAAATTTAACGAGCAAGTTTCAGTTGGGAGCAATGAGCCTGCAAAAAGGCAACGCAGGTGGAACACCGAAACAGTTAAAGGGCCAGATCTGAAAAGCACTGTTCCCAGAGCTGCAACTACACCAAAGGACGAGCCAGTTGCGCTGAAACGCAACTTCTCTAGGTCTGATTCAACTGTAACTGATGATGCACCTAAAGAACGCATTGTTCCACCATCACAAAAGCCCCCAACTAATTCCCTCCGAATTGATCGTTTCCTCCGTCCTTTTACCCTAAAAGCAGTGCAAGGGCTTCTTGGTAAAAGTGGGAGTATCACTAGTTTCTGGATGGACCAAATAAAGACCCATTGCTATGTTACTTACTCATCAGTTGAAGAAGCTATTGAGACCAGAAATGCTGTGTATAATTTGCAATGGCCTCCAAATGGTGGGCGGCTCTTAGTTGCCGAGTTTGTTGATCCTCAGGAGGTGAAAATGAAGTTAGAACCTCCTCCTCCTCCTCCTCCTGCCGCCGCCCCTGTCAGCAGTGGTCCAGCAGTTCTTCCTACACCACCATCCTCACAACCAGAGCCTTCCCCCCGTATGCGCAGGGAGCAACCTCCAGCTCCAGCTACTCTCCCACCTCCACCCCCATTGTCGAAGCTCCCACCAGCGGCAAGAGAACGGCTTCCGTCCCCACCGCCCCTTCCAGAGAAGGTTGACCCACCTATTCTCACTTTGGATGATCTCTTCCGCAAAACCACAGCAACTCCTCGCATCTACTATTTACCTTTGTCTGAAGAGCAAGTATCTGCTAGACTTGCAGCTCGCAGTAAAAGCACTCGGATAGGGCATGGAGACATTTTTCCTTCGGTGTCGGGAAATCCCCGTGAAGCCGGACGACATCAGAAACTCCTTCAGATTCTGCAGGCTTTACGGGAAAAGGATGATTACACTAAGTTAACATCCCCAGGCTTACCGACAGATAAGGTTTCGTGGGATACGATCCTCCAGAGGCTCTGTGAGCCCAACTCTACTTGGACATACAACCACAAAGGGGCTCGAGTTAGACTAGAAGGGAACCAGCTGACCAAGGAAGCCACCACATGGCTATACCTCATCTTCACATACGTCCACCCAAACTCCCATTTCACAGATATTACAACAGACCCTGCAATTCGGTTGTATTGCATTTTGGACGAAAGGCGGGTGGACCTCCACCGGCTAATACATAACAAGATGAAGGAGTTCTTCAAATCTTCAGTGCTTCCATTTCCAAATCTTGTTATGAGATTAGCTACATCCTACGGCATTTGA 2433 0.4727 MSSSKYPILDNRPIHQWKVTELKEELKRRRLTTKGLKDELVRRLDEALRAEMEADESASKDDANGFEVHAGGGSEDSQTVTADVEVVQTIEEESVQTMEKGNNENVEPTQEVETVEKGNTVVVEPIDTESTEKVQEDVDDESKKNDKQGGVANPVDISSVSAVDEDIEQAGLPAGVDPENVKDEQSAHGSTVETSDKITETVSTEVVVSDQHTHSEVKSNKDLAIKVENEESKAQLDNEVPKPQVECDTKPQLECDTKPPSEDLMPNTSVPENQNKILLGRRWWKNHHPEKMYLNDDVGYPEKLNLDRSSGDDSMEEDLPESKHVDSKFDVDERDNVENIEVSIVKEESKTIVVKNDLSAGKSDTHQDIDISPVALAEKRKFNEQVSVGSNEPAKRQRRWNTETVKGPDLKSTVPRAATTPKDEPVALKRNFSRSDSTVTDDAPKERIVPPSQKPPTNSLRIDRFLRPFTLKAVQGLLGKSGSITSFWMDQIKTHCYVTYSSVEEAIETRNAVYNLQWPPNGGRLLVAEFVDPQEVKMKLEPPPPPPPAAAPVSSGPAVLPTPPSSQPEPSPRMRREQPPAPATLPPPPPLSKLPPAARERLPSPPPLPEKVDPPILTLDDLFRKTTATPRIYYLPLSEEQVSARLAARSKSTRIGHGDIFPSVSGNPREAGRHQKLLQILQALREKDDYTKLTSPGLPTDKVSWDTILQRLCEPNSTWTYNHKGARVRLEGNQLTKEATTWLYLIFTYVHPNSHFTDITTDPAIRLYCILDERRVDLHRLIHNKMKEFFKSSVLPFPNLVMRLATSYGI 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01337 810 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 295 652 - -
Aip10g01337 810 SMART sap_9 14 48 IPR003034 -
Aip10g01337 810 MobiDBLite consensus disorder prediction 94 116 - -
Aip10g01337 810 Pfam Putative plant transposon protein 701 806 IPR046796 -
Aip10g01337 810 Pfam SAP domain 16 48 IPR003034 -
Aip10g01337 810 SUPERFAMILY SAP domain 14 50 IPR036361 -
Aip10g01337 810 MobiDBLite consensus disorder prediction 538 613 - -
Aip10g01337 810 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 295 652 - -
Aip10g01337 810 SUPERFAMILY RNA-binding domain, RBD 451 539 IPR035979 GO:0003676
Aip10g01337 810 ProSiteProfiles SAP motif profile. 14 48 IPR003034 -
Aip10g01337 810 MobiDBLite consensus disorder prediction 191 210 - -
Aip10g01337 810 CDD RRM_ACINU 457 541 IPR034257 -
Aip10g01337 810 Gene3D SAP domain 14 59 IPR036361 -
Aip10g01337 810 MobiDBLite consensus disorder prediction 51 80 - -
Aip10g01337 810 MobiDBLite consensus disorder prediction 211 237 - -
Aip10g01337 810 MobiDBLite consensus disorder prediction 537 615 - -
Aip10g01337 810 MobiDBLite consensus disorder prediction 129 147 - -
Aip10g01337 810 MobiDBLite consensus disorder prediction 384 459 - -
Aip10g01337 810 MobiDBLite consensus disorder prediction 94 273 - -
Aip10g01337 810 MobiDBLite consensus disorder prediction 292 330 - -
Aip10g01337 810 MobiDBLite consensus disorder prediction 427 443 - -
Aip10g01337 810 Pfam RNSP1-SAP18 binding (RSB) motif 610 652 IPR032552 -
Aip10g01337 810 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 275 - -
Aip10g01337 810 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01337 Aip-Chr10 21884619 21891392 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01337 K12875 - gmx:100816245 674.47