Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01245 ATGTCTTCACTTCAACTGTTGCAACTAACTAAGCATGGCCAGAATTTTCTGGCTTCAAGGAGGAAAACGTTACTGTTTGCAACTGGTATCTTTGTTGCTGGTGGAACAGCTGCATATATGCAATCAAGGTCAAGGTTTAATAGACGTGATTTAGGTCATTGTAACGGGCACAATGATGATAACCAAGTCACAACAGAGGAGGTTGTGAAGGGTTCTACAGCATCAAAAAATAAACAAAAGAAAGGGGGGTTGAAGTCTCTTCAAGTCCTTGCTGCAATTCTTCTATCTGAGATGGGAAAATTAGGTGCAAGGGACCTTTTAGCTTTAGTTGGCGTAGTGGTGTTTCGAACTGCTTTGAGCAACAGGCTAGCAAAAGTGCAAGGCTTCCTATTTCGTGCTGCATTTCTTCGACGAGTGCCATTGTTTTTTCAGCTTATTTCAGAAAATATTCTTTTGTGCTTCCTCTTATCGACCATGCATTCTACATCAAAGTACATAACAGGGACTTTGAGCCTGCATTTCAGAAAAATATTGACGAAGCTTATCCATTCCCACTATTTTGAGAACATGGTGTACTACAAAATATCACATGTAGATGGTCGGATAAATAACCCAGAGCAAAGAATTGCCAGCGATGTGCCAAGGTTCTGTTCAGAATTGAGTGAAATTGTACAGGATGATCTAACTGCAGTTGCTGATGGACTTCTATACACATGGAGACTGTGTTCATATGCTAGCCCAAAATATGTCTTCTGGATATTGGCCTACGTACTTGGAGCTGGTGCTGCAATCAGAAACTTCTCCCCTTCATTTGGGAAACTTATGTCTAAAGAGCAGCAATTGGAGGGAGAATATCGACAGCTTCACTCACGATTAAGGACTCACTCAGAAAGTATAGCATTTTATGGGGGAGAGAAGAGGGAAGAATCTCATATTCAACAGAAGTTTAAGAACTTGGTTAGACACATGAATGTTGTGCTACATGACCATTGGTGGTTTGGCATGATTCAGGACTTTTTGTTGAAGTACCTTGGTGCTACTGTTGCCGTTATATTGATCATAGAACCTTTCTTTTCTGGTCATCTAAGGCCTGACAGTTCAACTCTAGGGCGTGCAGAGATGTTAAGCAATCTAAGATATCATACAAGTGTCATAATTTCTCTGTTTCAGTCTCTAGGAACTCTTTCTATCAGTGCAAGACGGCTTAATCGTCTCAGTGGGTATGCTGATCGCATTTATGAGTTGATGGCTGTATCAAGGGACCTAAGCATGGTTGATGAGAAATCTTCACTGCAAAGAAAAGGAAGCAAAAATTTCTTAAGTGAAGCTAACTATATTGAATTTTCTGGTGTTGTCACCCCCACTGGTAATGTCTTGGTGGATGATCTGACCCTTAGGGTTGAGTCAGGATCTAATCTTTTGATTACAGGTAGTCCAAATGGCAGTGGAAAGAGCTCGCTTTTCCGTGTTCTAGGCGGTCTTTGGCCGTTGATATCTGGACATATTGTAAAACCAGGCATTGGTGCTGATCTCAACAAGGAGATATTCTATGTGCCACAAAGGCCGTACACTGCTGTGGGAACACTTCGTGATCAATTAATTTATCCTCTCACTGCAGATCAAGAGGTTGAACCACTCACAGAAAGTGGTATGGTGGAGCTATTGAAAAATGTTGACCTTGAATACCTGTTGGACCGTTACCCACCTGAAAAAGAGGTAAACTGGGGCGACGAACTTTCATTGGGTGAACAGCAGAGATTGGGCATGGCTAGACTTTTCTACCATAAGCCAAAATTTGCAATTCTTGATGAGTGCACTAGTGCTGTCACTACTGATATGGAAGAACGGTTTTGTGCTAAAGTACGGGCAATGGGAACATCATGCATTACCATATCACATCGTCCAGCTTTAGTTGCATTCCATGATGTGGTTTTGTCATTGGATGGTGAGGGAGGGTGGAGTGTTCATTACAAAAGGGAGGACTCTTCGACTGAAGTGGGGGTCAATACAATGAAGGCATCTGAGACAAAACGACGGAGTGATGCAAAAGCAGTTCAACGTGCATTTTCCATGAGCAAGAAGGATTATGCATTCTCAAATTCAAAGGCTCAGTCATATATTGCAAAAGTGATAGCATCATCTCCGTCTAAAAATAATGCTGTTTCGCCCTCTGCTGTGCCCCAACTTCGTGGTAATACAAGGGTATTACCATTGAGGATAGCTGCAATGTGCAAAGTATTGGTACCCACCGTGTTTGATAAACAAGGTGCACAACTGCTTGCTGTAGCTTTTCTTGTTGTTTCAAGAACATGGGTTTCGGACCGTATTGCATCGTTGAATGGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGCTGCCTTTATTCGGTTGATTGGTTTAAGTGTTCTACAAAGTGCTGCATCATCTTTCATTGCACCTTCTATAAGACACTTGACAGCTAGGCTAGCTCTTGGGTGGCGGATTCGTTTGACACAGCATCTACTCAAGAACTACTTGAGAAACAATGCATTCTACAAGGTCTTCCACATGGCAAGCAAAAACATTGACGCAGATCAGAGGATAACTCATGACTTGGAGAAGTTAACAACAGACTTGTCTGGACTGGTCACTGGATTGGTAAAACCATCTGTGGATATCTTGTGGTTCACATGGAGAATGAAGCTGTTAACTGGTCAGAGGGGAGTTGCAATACTCTATGCTTATATGTTACTTGGTCTAGGATTTCTAAGAACTGTTACTCCTGATTTTGGTGATTTGATAAGCCAAGAACAACAACTTGAAGGAACCTTCAGGTTCATGCATGAAAGACTATGTACTCATGCTGAATCTGTTGCTTTCTTTGGAGGTGGTGCCCGAGAAAAGGCTGTGATTCATCTTGTATATTTTTCTTTTTCTTGCACTTCATACACTATCACCCACTCCAAGTACCTTCTAAAAAAGAAGTGGTTGTTTGGTATACTGGATGATTTTATCACCAAGCAACTCCCTCATAATGTCACTTGGTTGCTGAGCTTGTTGTATGCCATGGAACATAAGGGAGACCGTGCATCAATAAATACTCAGGGTGAGCTGGCACATGCATTGAGGTTCTTAGCATCTGTTGTTTCTCAAAGCTTTTTAGCTTTCGGTGACATCCTTGAACTGAATAGAAAGTTTGTAGAGCTCTCTGGTGGTATTAATCGGATTTTTGAGCTTGAAGAACTATTGGAGGCAGCACAGTCTGGGAATATGATTGATGCTGATACGTCTCCAGTTAGAGATTCTCATTCTAAAGATGTTATTTCCTTTTCAAAAGTTGATATTGTCACCCCTACTCAAAAGATGTTGGCCAGAGAGTTGACATGTGACATTGCGCTTGGCGGAAGTCTGCTCGTTACTGGTCCAAATGGTAGTGGGAAAAGTTCCATTTTCAGAGTTCTTAGAGGACTTTGGCCAATTGCAAGTGGAAGACTATCTAGACCATCTGAAGGTGAGGATCAAGAGGCTGGAGCAGGTTGTGGCATTTTCTATGTTCCTCAGCGTCCCTATACTTGCCTGGGAACCCTGCGTGATCAAATTATATATCCCCTGTCCCGTGAGGAAGCAGAAATTAAAGCATTGAAGATCTACGGAAAAGGTATCTTGGTTCAACTTGCCAGACATGTGTTGGATTCACACTTACAAGTTATCCTAGAGAATGTTCGGTTGAATTATCTTCTAGAGAGGGAGAAGAGTGGCTGGGATGCAACTTTAAACTGGGAAGATATTCTTTCTCTCGGAGAACAACAGAGGCTAGGCATGGCACGGTTGTTCTTCCATAAGCCTAAATTCGGCATCCTTGACGAGTGCACCAATGCCACTAGTGTTGATGTTGAAGAACACTTATATGGGCTTGCAAAGGAGATGGGAATCACATTTGTTACTTCTTCGCAACGTCCTGCATTAATACCCTTCCATTCCTTGGAACTACGACTGATTGATGGCGAGGGCAACTGGGAGCTTCGTTTGATCAAGCAATGA 4023 0.4221 MSSLQLLQLTKHGQNFLASRRKTLLFATGIFVAGGTAAYMQSRSRFNRRDLGHCNGHNDDNQVTTEEVVKGSTASKNKQKKGGLKSLQVLAAILLSEMGKLGARDLLALVGVVVFRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLHFRKILTKLIHSHYFENMVYYKISHVDGRINNPEQRIASDVPRFCSELSEIVQDDLTAVADGLLYTWRLCSYASPKYVFWILAYVLGAGAAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSESIAFYGGEKREESHIQQKFKNLVRHMNVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFSGHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIYELMAVSRDLSMVDEKSSLQRKGSKNFLSEANYIEFSGVVTPTGNVLVDDLTLRVESGSNLLITGSPNGSGKSSLFRVLGGLWPLISGHIVKPGIGADLNKEIFYVPQRPYTAVGTLRDQLIYPLTADQEVEPLTESGMVELLKNVDLEYLLDRYPPEKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYKREDSSTEVGVNTMKASETKRRSDAKAVQRAFSMSKKDYAFSNSKAQSYIAKVIASSPSKNNAVSPSAVPQLRGNTRVLPLRIAAMCKVLVPTVFDKQGAQLLAVAFLVVSRTWVSDRIASLNGTTVKFVLEQDKAAFIRLIGLSVLQSAASSFIAPSIRHLTARLALGWRIRLTQHLLKNYLRNNAFYKVFHMASKNIDADQRITHDLEKLTTDLSGLVTGLVKPSVDILWFTWRMKLLTGQRGVAILYAYMLLGLGFLRTVTPDFGDLISQEQQLEGTFRFMHERLCTHAESVAFFGGGAREKAVIHLVYFSFSCTSYTITHSKYLLKKKWLFGILDDFITKQLPHNVTWLLSLLYAMEHKGDRASINTQGELAHALRFLASVVSQSFLAFGDILELNRKFVELSGGINRIFELEELLEAAQSGNMIDADTSPVRDSHSKDVISFSKVDIVTPTQKMLARELTCDIALGGSLLVTGPNGSGKSSIFRVLRGLWPIASGRLSRPSEGEDQEAGAGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAEIKALKIYGKGILVQLARHVLDSHLQVILENVRLNYLLEREKSGWDATLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEHLYGLAKEMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRLIKQ 1340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01245 1340 ProSitePatterns ABC transporters family signature. 579 593 IPR017871 GO:0005524
Aip10g01245 1340 Gene3D - 435 707 IPR027417 -
Aip10g01245 1340 ProSitePatterns ABC transporters family signature. 1258 1272 IPR017871 GO:0005524
Aip10g01245 1340 Pfam ABC transporter transmembrane region 2 744 1015 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip10g01245 1340 Pfam ABC transporter transmembrane region 2 90 358 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip10g01245 1340 Pfam ABC transporter 461 607 IPR003439 GO:0005524
Aip10g01245 1340 Pfam ABC transporter 1120 1286 IPR003439 GO:0005524
Aip10g01245 1340 CDD ABCD_peroxisomal_ALDP 1102 1333 - -
Aip10g01245 1340 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 590 1340 - -
Aip10g01245 1340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1097 1329 IPR027417 -
Aip10g01245 1340 Gene3D - 1088 1327 IPR027417 -
Aip10g01245 1340 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1102 1338 IPR003439 GO:0005524
Aip10g01245 1340 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 78 595 - -
Aip10g01245 1340 CDD ABCD_peroxisomal_ALDP 446 653 - -
Aip10g01245 1340 SUPERFAMILY ABC transporter transmembrane region 142 416 IPR036640 GO:0005524|GO:0016021
Aip10g01245 1340 Gene3D ABC transporter type 1, transmembrane domain 104 417 IPR036640 GO:0005524|GO:0016021
Aip10g01245 1340 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 440 676 IPR003439 GO:0005524
Aip10g01245 1340 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 78 595 - -
Aip10g01245 1340 SMART AAA_5 1127 1328 IPR003593 -
Aip10g01245 1340 SMART AAA_5 469 649 IPR003593 -
Aip10g01245 1340 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 590 1340 - -
Aip10g01245 1340 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 150 340 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip10g01245 1340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 444 649 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01245 Aip-Chr10 18830174 18840968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01245 1 1340 Acyl Lipid Metabolism Gene Families AT4G39850 77.374 0.0 2118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01245 K25819 - gmx:100813765 2335.45