Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01238 ATGGGAAAGAAGCAATCTTTGCGTAGCAAAGCTACCCAGATTGTATCTGTTATCCTGAATCCAATATCTGACTCTGACACTCTCAAACACCCTCCTCCAACACCTTCTGATGAGGTAGGGGGATTAGGAGGAACAACAAGTGAACCAGAGAAACCTGAAGAGGGTAGCAATGATTTAGTTGATGGCCCTGATACCTCATCTTTCAGTGCATTTCTATATTCTTTCTTGTCTTCATCAGATGCTGGAGGAGATAATGCAAAGGTACATGGACAGAGTGATGGTAAAGGTGCTTCAGGTGATGATAATAACCCTTTACCCGATTCATCGTTGAAGGAGAATAATGGTGGAAAGAAAAGCTTGTTCTCTAGGAGTAAGCAATCACTTGGTAGAGTTATTCGCCAAGCCGCTAGGATCGGTGGATTTCGCCATCAGGGGCGAAAGGATAATAATTCCGAAATGAATTCTGATTGTCTAAATGGTTCTGGATTGAATGGTGTTGAGATGAATCATCTTTCAACTGTGAAAGGGAAAGAATCAGAGTCTGTGTCTTTGGTTGACATGCCAGAAATTTCTGAGCCGTCGATGCTCCTTTCAGACGCGATGAGAAGTACTCTCTATGCTTCTCTTCCTGCTCTTGTTCATGGAAGGAAGTGGCTGTTGCTGTACAGCACTTGGAGGAACGGTATATCACTTTCAACCCTTTATCGAAGAAGCATGCTTTGGCCTGGATTGAGTTTGCTGGTTGTCGGAGACCGAAGAGGAGCAGTGTTTGGAAGCTTAGTTGAAGCACCTCTTAGACCATCCAACAAGAAATACCAGGGAACAAACAGTACATTTGTTTTCACAAGTATTTCTGGCCATCCTGTTATATATCGTCCAACAGGGTTAAACCGCTATTTCACACTATGCAACACTGAGTTCTTAGCAATTGGAGGGGGAAGTCATTTTGCGCTTTATTTGGATGGTGATCTATTGAATGGCTCAAGCTCGGTCTCGGAAACCTACGGAAATCCTTGCCTTGCGAATTCTCAAGATTTCGAAGTGAAGGAAGTAGAGGTGCTCATGCAACTTCTTCGATTCTTCTCACTTGCACACAATGTTACACACTCCTTCATCCTTTCTTTTTCATCTTTTCTGGTTGCTAGTTTCAAGAGACATTTATAG 1164 0.4296 MGKKQSLRSKATQIVSVILNPISDSDTLKHPPPTPSDEVGGLGGTTSEPEKPEEGSNDLVDGPDTSSFSAFLYSFLSSSDAGGDNAKVHGQSDGKGASGDDNNPLPDSSLKENNGGKKSLFSRSKQSLGRVIRQAARIGGFRHQGRKDNNSEMNSDCLNGSGLNGVEMNHLSTVKGKESESVSLVDMPEISEPSMLLSDAMRSTLYASLPALVHGRKWLLLYSTWRNGISLSTLYRRSMLWPGLSLLVVGDRRGAVFGSLVEAPLRPSNKKYQGTNSTFVFTSISGHPVIYRPTGLNRYFTLCNTEFLAIGGGSHFALYLDGDLLNGSSSVSETYGNPCLANSQDFEVKEVEVLMQLLRFFSLAHNVTHSFILSFSSFLVASFKRHL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01238 387 Pfam TLD 220 353 IPR006571 -
Aip10g01238 387 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 1 359 - -
Aip10g01238 387 MobiDBLite consensus disorder prediction 84 128 - -
Aip10g01238 387 SMART 109ultra 194 356 IPR006571 -
Aip10g01238 387 MobiDBLite consensus disorder prediction 96 128 - -
Aip10g01238 387 PANTHER TLD-DOMAIN NUCLEOLAR PROTEIN 1 359 - -
Aip10g01238 387 MobiDBLite consensus disorder prediction 18 64 - -
Aip10g01238 387 ProSiteProfiles TLDc domain profile. 195 357 IPR006571 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01238 Aip-Chr10 18737180 18740589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01238 217 353 EF-hand Containing Proteins AT5G06260 28.571 2.06e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01238 - - aip:107622578 699.893