Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01137 ATGGGAGAAACCGGTATCATTGTCCGGTTCCCTGGAAACTTAGACCCCAGAGCTCAAGAGTTCATACCCACAAACACAACCCACACTCCCTTGCCGCAACTGGCAACCGTCTTCCCCCTTCCCCACCACCCCTACACCGCCCAACCCTCGTATCCACCTTACCCTTACCCTTATGCCCCATCCCTTGGGGTTGGTGTACTTCCCTTTCGCGATGCTCAGCTTCCCCACGCCGCCGCCGCCGCCACCGCCGTTCCATTCCCTCACTTCTCCACCTCCGCCGCATATGCAGCTCCTCCTCCTCCTTTCCCGTCGCCTCACCTGTCCACGTCACCCACCCGGTCGTTACTCCTGAGTCCCTTACCATCAGACCTGGCGGTTAGCGAGTCCTCACTGAGGCGCGAACTTGAAGTGTTCGGTGACGTCAGAGGGGTCCAGATGGAAGCCCTCCATGACGGAATCGTGACGGTCCATTTTTATGACCTCAGGGACGCCGAAACGGCGCTAACGGCGATTCGACAGCAACACATGCAGCACCAGGAGAGGCTCCGCAACCACTATGCCTCGTTGTTCAAGGCCAGAAGCGCGTTTCCTCTACCGCCACCGCCGCCGGTGGTTTCTCCGCCGGCGCCCGGTCTCATCGCTGGGAGAGCTGTGTGGGCGCAGTACGTTCTCTCAGTTTGCAACGCCGTCCCGGACGGTCAGAACCAAGGCACCGTCGTGGTCTTTAACTTGGACTCGGACGTTTCCGCCGAGAATCTCAAACGCGTTTTTGAGGCTTTCGGTGCAGTAAAGGAACTAAGAGATACACCGTCGAAAAAGAATCAAAGGTTTGTGGAGTTCTATGACGTTAGAGATGCGGCGAAGGCATTGAAACAAATGGACGGGAAGGAAATTTATGGTAGAAAGGTTGTAATTGAGTTCAGTAGACCCGGTGGTCAAAGCAGAAAGTTCTTCCATTCCGCAGCTTCTAAACAAAAGCCATTGAACCTGAATAATGTTCCACCGTTCTATGCTTCGAATCATCCTCATCACGTGCAACGCAAAAACTCGCGTCGTTTTGGAAGTTCATGCTGGAACTCTTCATGTTCTACTACATTTCCGCAATTGCCCTTGTGGAAGAGTTCAGGTGGTTCGGATTCTGGGTCCGTTGAGGCAGTTGGGAACGCCGTTTCGGAGGAGCAGCTGCAGCGGCGCTCGGACGCTAGTCAGAAGAGGAGTCCCGTTAAAGAAAGCGGCGAGGTCGGTGAAGGAAGCGTAAAACACCACTACCAGCAACATCATCAACAACAACATATAGTAAAGAGTAGACACTGGAAGGGGAAGCAAGGGAAGAAGCATGAGACAAGGTTTCTAATTAGAGAAGACGCCATTGTGGAGTCTAGTTCCAGAGATCCACGAACTACTGTGATGATCAAGAACATTCCCAACAAGTATAGTCAGAAGCTACTATTAAATATGCTGGACAACCATTGCATACACTGCAACGAACAGATTGGCGACGACGAGGACCAACCATTGTCTTCCTACGATTTTGTGTACCTTCCAATTGATTTCAACAACAAGTGCAATGTGGGGTATGGGTTTGTGAACATGACATCTCCCGAAGCCACTCTGCGGCTATATAAGGCGTTCCACCTGCAACATTGGGAGGTATTCAATTCCAGGAAAATTTGCGAAGTTACATATGCAAGAGTCCAGGGTTTGGAAGCTTTGAAAGAGCATTTCAAGAACTCAAAGTTCCCATGCGAGATGGAGCACTACCTGCCGGTGGTGTTTTCACCTCCTCGGGACGGTAAGTCCCTGACAGAGCCACTTCCAATAGTTGGCAACAACAAGAACAACAACCACCACCACCACAGCATTATTATTCCCATGGCCATGATGAACGTTCAAAATGGTGTCCAAAACTCTGACGAGGATGATGATGATTTTGATGATGATGATAGGGCAACAAGAAGTGCTTCTACAATTGCTTGTGAAGACGTGCATAGTAGCCAAAGTGGCGGCGTATGTATGATGATTGATGAAAACACTGAGTAG 2040 0.5098 MGETGIIVRFPGNLDPRAQEFIPTNTTHTPLPQLATVFPLPHHPYTAQPSYPPYPYPYAPSLGVGVLPFRDAQLPHAAAAATAVPFPHFSTSAAYAAPPPPFPSPHLSTSPTRSLLLSPLPSDLAVSESSLRRELEVFGDVRGVQMEALHDGIVTVHFYDLRDAETALTAIRQQHMQHQERLRNHYASLFKARSAFPLPPPPPVVSPPAPGLIAGRAVWAQYVLSVCNAVPDGQNQGTVVVFNLDSDVSAENLKRVFEAFGAVKELRDTPSKKNQRFVEFYDVRDAAKALKQMDGKEIYGRKVVIEFSRPGGQSRKFFHSAASKQKPLNLNNVPPFYASNHPHHVQRKNSRRFGSSCWNSSCSTTFPQLPLWKSSGGSDSGSVEAVGNAVSEEQLQRRSDASQKRSPVKESGEVGEGSVKHHYQQHHQQQHIVKSRHWKGKQGKKHETRFLIREDAIVESSSRDPRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGDDEDQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGKSLTEPLPIVGNNKNNNHHHHSIIIPMAMMNVQNGVQNSDEDDDDFDDDDRATRSASTIACEDVHSSQSGGVCMMIDENTE 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01137 679 MobiDBLite consensus disorder prediction 373 396 - -
Aip10g01137 679 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 189 IPR000504 GO:0003723
Aip10g01137 679 Gene3D - 413 570 IPR012677 -
Aip10g01137 679 MobiDBLite consensus disorder prediction 633 655 - -
Aip10g01137 679 Gene3D - 231 318 IPR012677 -
Aip10g01137 679 MobiDBLite consensus disorder prediction 397 423 - -
Aip10g01137 679 SMART rrm1_1 238 306 IPR000504 GO:0003723
Aip10g01137 679 SMART rrm1_1 114 183 IPR000504 GO:0003723
Aip10g01137 679 MobiDBLite consensus disorder prediction 424 444 - -
Aip10g01137 679 MobiDBLite consensus disorder prediction 373 444 - -
Aip10g01137 679 PANTHER TERMINAL EAR1-LIKE 1 46 642 - -
Aip10g01137 679 SUPERFAMILY RNA-binding domain, RBD 237 545 IPR035979 GO:0003676
Aip10g01137 679 SUPERFAMILY RNA-binding domain, RBD 99 177 IPR035979 GO:0003676
Aip10g01137 679 Pfam RNA recognition motif 2 466 576 IPR007201 -
Aip10g01137 679 PANTHER RNA BINDING PROTEIN 46 642 - -
Aip10g01137 679 CDD RRM3_EAR1_like 466 567 IPR034458 -
Aip10g01137 679 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 310 IPR000504 GO:0003723
Aip10g01137 679 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 303 IPR000504 GO:0003723
Aip10g01137 679 Coils Coil 161 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01137 Aip-Chr10 16003588 16007876 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01137 - - adu:107469016 1216.06