Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01107 ATGGAGTTGGTTGATCTCTTCATGGTGTCAACAACAGCATTAGGCTTCATCTTTGTTTTGAAGAATCTCTTCAATTTTGTGAAGTGGGTATGGAGAATGTTCTTCAGGGCTCCAAAGAATCTAACAGAGTATGGTTCATGGGCCATAATCACTGGCTCCACTGATGGAATTGGCAAAGCCATGGCACATGAAATGGCATCTAAGGGTCTCAACCTTCTCTTGCTTGGTAGAAACCCTACAAAGCTTGAAGCCACATCCAATGAGATAAGAGAAAAGAACAATAAGGTTAGTGTTGAAGTCAAGTGTTTGGTCGTTGACTTTGAGAAAGAAAATGGAGAGAGAATAAAAGAAAGGGTTGAGGAAGCAATAGAGGGTTTGGATGTTGGAATTCTTGTAAATAGTGCTGGATTGGCATACCGTTATGCTAGATTCTTTCATGAGGTTGATTCTAATCTTATGAATAGTATCATAAAAGTGAATGTTGAAGGAACTACTTGGATTACAAAAGCAGTGATTCAAAAGATGGTAGACAAGAAGAAAGGAGCAATTATTAATATGGGTTCTGGTTCCACTGTTGTCCTTCCTTCTTATCCTTTGGTTACTCTCTATGCCGCCACCAAAGCGTATCTTGCAATGTTCTCAAGAAGCATCAGTTTGGAGTATAAGCAACAAGGAATTGACATCCAGTGTCAGGCTCCATTATTTGTGTCAACTAAGATGACAAAGATGGGAAGTTCAGTGTTTGTTCCAACGGCAGAAAAGTATATAAAATCATGCACAAGATGGATTGGGTATGAAAGTGTGGTTGAGCCCTATTTGCTCCATTCTCTGCAAGGTTTTTTCATAAGAGCAATTCCTGACCCACTTGTTGATTCTTATTTGCTTCGTTATTTTCTATATTGGCGCAAAAGAGGGCTCCTCAAGGACTCCAACACTACCAACAATTTACCACCGTCATCTTAA 963 0.3956 MELVDLFMVSTTALGFIFVLKNLFNFVKWVWRMFFRAPKNLTEYGSWAIITGSTDGIGKAMAHEMASKGLNLLLLGRNPTKLEATSNEIREKNNKVSVEVKCLVVDFEKENGERIKERVEEAIEGLDVGILVNSAGLAYRYARFFHEVDSNLMNSIIKVNVEGTTWITKAVIQKMVDKKKGAIINMGSGSTVVLPSYPLVTLYAATKAYLAMFSRSISLEYKQQGIDIQCQAPLFVSTKMTKMGSSVFVPTAEKYIKSCTRWIGYESVVEPYLLHSLQGFFIRAIPDPLVDSYLLRYFLYWRKRGLLKDSNTTNNLPPSS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01107 320 PIRSF 11-beta-HSD1 1 308 - -
Aip10g01107 320 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 190 218 IPR020904 GO:0016491
Aip10g01107 320 PRINTS Glucose/ribitol dehydrogenase family signature 47 64 IPR002347 -
Aip10g01107 320 PRINTS Glucose/ribitol dehydrogenase family signature 126 137 IPR002347 -
Aip10g01107 320 PRINTS Glucose/ribitol dehydrogenase family signature 175 191 IPR002347 -
Aip10g01107 320 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Aip10g01107 320 PRINTS Glucose/ribitol dehydrogenase family signature 224 241 IPR002347 -
Aip10g01107 320 PANTHER RH59310P 2 311 - -
Aip10g01107 320 CDD 17beta-HSD1_like_SDR_c 45 286 - -
Aip10g01107 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 309 IPR036291 -
Aip10g01107 320 Gene3D - 42 270 - -
Aip10g01107 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 137 IPR002347 -
Aip10g01107 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 181 189 IPR002347 -
Aip10g01107 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Aip10g01107 320 Pfam short chain dehydrogenase 47 242 IPR002347 -
Aip10g01107 320 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 2 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01107 Aip-Chr10 15225015 15227757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01107 1 310 Lipid Metabolism Gene Families AT1G67730 47.634 5.22e-104 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01107 K10251 - gmx:100816067 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g01107 10 15225015 15227757 Aip10g01107 10 15225015 15227757 ECH