Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00175 ATGCGCGTGGGAGAGGGAGAGCGAGGCATCCCATCTCATCCCATCCATGATCTGAAGAAAGCCACGCCTCCCCACCCCGCTAAGAAGCTCCTCATCAAGCTCCACAAAGGTAAGCCAACACTGCCCACAAATTTTGAGGAGGTTACATGGGCAAAATTGAAGTCTGCTATTTGTGCTATATTCTTGAAGCAACCTGACTCTTGTGATTTGGAAAAGCTTTATCAGGCTGTCAGTGATCTTTGCATATATAAAATGGCTGGAAATCTTTATCAGCGAATTGAAACGGAATGCGAAGCACATATATCTACAGCTTTGCAGTCTTTGGTTGGACAAAGCCCAGATTTGGTTGTTTTTCTATCTCTAGTTGAGAGATGTTGGCAGGATCTTTGTGACCAAATGTTGATGATTCGAGGTATAGCCTTGTATCTGGATAGGACATATGTGAAGCAAACAGCAAATGTACGGTCCTTATGGGACATGGGCTTACAACTTTTCCGCAAACATCTTTCATTATCTCCTGAAGTTGAACACAAAACTGTTACCGGTCTTCTAAGAATGATTGAAAGTGAAAGATTAGGTGAAGCAGTGGATAGAACGCTTCTAAACCATCTTTTGAAGATGTTCACAGCACTGGGAATATATGCAGAAAGCTTCGAGAAGCCATTTCTTGAATGCACATCTGAATTTTATGCTGCTGAAGGTATGAAATACATGCAGCAATCAGATGTTCCAGATTATTTGAAGCATGTGGAGACAAGATTGCAAGAGGAACATGACAGATGCCTGATCTACTTGGATGCGAGTACTAGGAAGCTGCTGATAGCCACAGCAGAAAAGCAACTTCTTGAACGTCATATACCTGCCATTCTTGATAAGGGTTTCTCTGTGCTTATGGATGGAAATCGCATTGAAGACCTTCAGAGAATGTACTCACTCTTTTTAAGGGTCAATGCCCTTGAGTCACTAAGACAAGCCCTAAGTTCATATATCAGGAGAACTGGGCAGGCCATTGTTATGGATGAGGAGAAAGATAAAGACATGGTTTCTTCACTTCTGGAGTTTAAGGCTTCTCTTGACAGAATATGGGAAGAAAGTTTTTATAAGAATGAAGTATTCTCTAACACCATTAAAGATTCATTTGAGCATCTTATCAATCTACGACAGAACCGACCAGCAGAGTTGATTGCCAAGTTCTTAGATGAGAAGCTCCGTGCAGGTAACAAGGGTACTTCTGAAGAGGAACTGGAGGGAACACTTGATAAAGTCCTGGTTTTATTTAGGTTCATTCAGGGCAAAGATGTGTTTGAAGCTTTTTATAAGAAAGATCTTGCAAAAAGACTTCTTTTGGGAAAAAGTGCTTCTATTGATGCAGAGAAGTCTATGATATCCAAGTTGAAGACTGAGTGTGGCAGTCAGTTCACAAACAAATTGGAAGGAATGTTTAAGGACATTGAATTATCAAAAGAAATAAATGAGTCCTTCAAACAGTCATCCCAAGCAAGGACAAAACTCCCATCAGGAATTGAAATGAGTGTTCATGTCCTGACAACTGGGTACTGGCCAACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAATGTTTACCAGGATATTTTCAAAGAGTTCTATCTTAGCAAATACAGTGGAAGGCGTTTGATGTGGCAAAATTCATTAGGTCACTGTGTCTTGAAGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCAGTCTCCCTATTTCAGACTGTTGTTTTGATGCTATTCAATGATGCCGAGAAACTGAGCTTTCAAGATATCAAGGACTCTACCAGTATCGAGGACAAAGAACTGAGAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAGAAGTCGCCGAAGGGTAGAGATGTGGAGGATGATGACTCATTCTCTTTTAATGATGGCTTTACAGCTCCTCTTTACCGTATAAAGGTGAATGCCATTCAGTTGAAGGAGACAGTGGAGGAAAACACAAGCACCACTGAAAGAGTTTTCCAAGACCGTCAGTATCAGATTGATGCTGCCATTGTGAGGATAATGAAGACAAGGAAAGTACTTAGTCACACCCTTCTTATTACCGAACTCTTCCAACAGCTCAAGTTTCCAATAAAACCAGCTGATTTGAAGAAAAGGATTGAAAGCCTGATTGACAGAGAGTATCTGGAGAGGGACAAGAGCAACCCCCAAATATACAATTATCTGGCATAG 2241 0.4119 MRVGEGERGIPSHPIHDLKKATPPHPAKKLLIKLHKGKPTLPTNFEEVTWAKLKSAICAIFLKQPDSCDLEKLYQAVSDLCIYKMAGNLYQRIETECEAHISTALQSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTANVRSLWDMGLQLFRKHLSLSPEVEHKTVTGLLRMIESERLGEAVDRTLLNHLLKMFTALGIYAESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVETRLQEEHDRCLIYLDASTRKLLIATAEKQLLERHIPAILDKGFSVLMDGNRIEDLQRMYSLFLRVNALESLRQALSSYIRRTGQAIVMDEEKDKDMVSSLLEFKASLDRIWEESFYKNEVFSNTIKDSFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAEKLSFQDIKDSTSIEDKELRRTLQSLACGKVRVLQKSPKGRDVEDDDSFSFNDGFTAPLYRIKVNAIQLKETVEENTSTTERVFQDRQYQIDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKSNPQIYNYLA 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00175 746 Gene3D Cullin Repeats 389 500 - -
Aip10g00175 746 ProSiteProfiles Cullin family profile. 390 619 IPR016158 -
Aip10g00175 746 Gene3D Cullin; Chain C, Domain 2 505 660 - -
Aip10g00175 746 PANTHER CULLIN 19 746 IPR045093 -
Aip10g00175 746 Pfam Cullin family 50 647 IPR001373 GO:0006511|GO:0031625
Aip10g00175 746 Gene3D Cullin Repeats 172 285 - -
Aip10g00175 746 PANTHER CULLIN-4A 19 746 - -
Aip10g00175 746 MobiDBLite consensus disorder prediction 1 23 - -
Aip10g00175 746 ProSitePatterns Cullin family signature. 719 746 IPR016157 GO:0006511|GO:0031461|GO:0031625
Aip10g00175 746 SUPERFAMILY Cullin homology domain 387 657 IPR036317 -
Aip10g00175 746 Gene3D Cullin Repeats 37 168 - -
Aip10g00175 746 Gene3D Cullin Repeats 287 388 - -
Aip10g00175 746 SMART Cullin_Nedd8_2 675 740 IPR019559 -
Aip10g00175 746 SUPERFAMILY "Winged helix" DNA-binding domain 658 746 IPR036390 -
Aip10g00175 746 Pfam Cullin protein neddylation domain 678 738 IPR019559 -
Aip10g00175 746 Gene3D - 673 746 IPR036388 -
Aip10g00175 746 SUPERFAMILY Cullin repeat-like 44 386 IPR016159 -
Aip10g00175 746 SMART cul_2 420 569 IPR016158 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00175 Aip-Chr10 1665620 1673589 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00175 K10609 - gmx:100805491 1364.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00175 10 1665620 1673589 Aip10g00175 10 1665620 1673589 ECH
Aip10g00175 10 1665620 1673589 Aip01g02797 01 129536269 129543484 PCT