Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00052 ATGGAGCTTCGCCGGAGACACGTCGCTGCAGCTGCCGTTGCCGCCGGCGAATCACTCAAAATCCAGAAGCCCGCTGGGGACTCGTCAATTTTCCCTCTTTACCTAACCAACGCTGTTTCCTTCGGAGCCTTCTTCTCCGTCGCGTACTTTCTCCTCCACCGCTGGCGCGAGAAGATCCGAACATCGACCCCGCTTCATGTCATAACCGCTGATGAATCCGCCGCGATCGCTTTACTCGTTGCGTCTGCCGTGTATCTCTTCAGGTTCTTCGGCATCGGCCTCTCACGCGCTTCCGTTGACGATGATCTCTCTGACGAAGAGATAATCGCCAAGGAGGACGGCCGGACGCCGGGGCCGTGTCCTGCCGCCATCTCAGAGGAGACGGCTGTGATTCCCTCACCAATACCGGCGAAAGCCTTGTTTAGGACTGATTCGGATTCATTGTCAACGGAAGACGAGGAGATCATCCAGGCTGTGGTTTCAGGCTCAGTGCCATCATATTCCCTGGAATCAAAGCTTGGAGACTGTCGCCGGGCGGCGGCTGTTCGGCGCGAGGCTGTTCAGAGGTTGACAGGGAGGTCATTGGAGGGTTTGCCAGTGGGAGGATTTGATTATGAGTCAATATTGGGGCAATGCTGTGAAATGCCAATAGGGTTCGTGCAGATTCCAGTAGGTGTGGCAGGTCCATTGTTGCTTGATGGGAGAGAGTACACTGTGCCAATGGCAACCACAGAAGGATGCCTTGTTGCCAGTACCAACAGAGGCTGCAAGGCCATCTATGCCTCCGGTGGGGCTACCTCCGTGCTCATGAGGGATGGTATGACAAGAGCACCGGTGGTTCGGTTTGCCACCGCCAAGAGGGCTGCACAGCTGAAGTTCTACTTGGAGGATCCTCTCAACTTTGAGTCTATAGCTGTAGTTTTCAACAAGTCAAGCAGGTTTGCTAGGTTACAGAATATTCAGCCTAATATTGCTGGCAAGAATTTGTACATTAGATTTCGTTGCAGCACTGGAGACGCCATGGGGATGAACATGGTTTCCAAAGGTGTCCAAAACGTCCTTGATTTCCTTCAGAGTGACTTCCCGGACATGGAAGTTATTGGAATCTCTGGAAATTTCTGCTCGGACAAGAAGGCTGCTGCTGTTAACTGGATTGAAGGTCGCGGTAAGTCTGTGGTCTGTGAGGCTGTCATTAAGGAAGAGGTAATTAAGAAGGTGTTGAAAACTAGTGTGGAATCCCTAGTAGAGCTTAACGTGCTTAAAAACCTTACCGGATCAGCAATAGCTGGTGCTCTTGGCGGGTTCAATGCCCATGCTAGCAACATTGTCTCTGCTATCTACCTAGCCACTGGTCAGGATCCTGCTCAGAATGTGGAGAGTTCCCACTGCATCACCATGATGGAACCAGTGAACAATGGCAAGGACCTTCACATATCTGTCACCATGCCTTCCATTGAGGTGGGTACTGTTGGAGGGGGCACACAACTTGCTTCTCAGTCAGCTTGCCTCAATTTACTTGGAGTCAAGGGCGCCAGTAAAGAAACCCCGGGTGCAAATGCTAGGCTACTGGCCGCCATAGTAGCAGGTTCAGTCCTCGCCGGAGAGCTTTCGCTCATGTCTGCAATCGCAGCTGGGCAGCTTGTTAAGAGCCACATGAAATACAACAGATCAAGCAGAAATATCACAAATGTTGTATCATGA 1701 0.5173 MELRRRHVAAAAVAAGESLKIQKPAGDSSIFPLYLTNAVSFGAFFSVAYFLLHRWREKIRTSTPLHVITADESAAIALLVASAVYLFRFFGIGLSRASVDDDLSDEEIIAKEDGRTPGPCPAAISEETAVIPSPIPAKALFRTDSDSLSTEDEEIIQAVVSGSVPSYSLESKLGDCRRAAAVRREAVQRLTGRSLEGLPVGGFDYESILGQCCEMPIGFVQIPVGVAGPLLLDGREYTVPMATTEGCLVASTNRGCKAIYASGGATSVLMRDGMTRAPVVRFATAKRAAQLKFYLEDPLNFESIAVVFNKSSRFARLQNIQPNIAGKNLYIRFRCSTGDAMGMNMVSKGVQNVLDFLQSDFPDMEVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEEVIKKVLKTSVESLVELNVLKNLTGSAIAGALGGFNAHASNIVSAIYLATGQDPAQNVESSHCITMMEPVNNGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKETPGANARLLAAIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSRNITNVVS 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00052 566 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 152 556 IPR004554 GO:0004420|GO:0005515|GO:0008299
Aip10g00052 566 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 28 137 - -
Aip10g00052 566 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 148 566 - -
Aip10g00052 566 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 148 566 IPR002202 GO:0004420|GO:0015936
Aip10g00052 566 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 28 137 IPR002202 GO:0004420|GO:0015936
Aip10g00052 566 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 212 233 IPR002202 GO:0004420|GO:0015936
Aip10g00052 566 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 239 259 IPR002202 GO:0004420|GO:0015936
Aip10g00052 566 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 330 348 IPR002202 GO:0004420|GO:0015936
Aip10g00052 566 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 370 395 IPR002202 GO:0004420|GO:0015936
Aip10g00052 566 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 421 447 IPR002202 GO:0004420|GO:0015936
Aip10g00052 566 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 475 496 IPR002202 GO:0004420|GO:0015936
Aip10g00052 566 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 332 346 IPR023076 GO:0004420
Aip10g00052 566 Gene3D - 147 222 IPR023282 GO:0004420
Aip10g00052 566 Gene3D - 223 551 IPR023074 GO:0004420
Aip10g00052 566 Gene3D - 273 389 IPR009023 -
Aip10g00052 566 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 273 389 IPR009023 -
Aip10g00052 566 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 152 556 IPR002202 GO:0004420|GO:0015936
Aip10g00052 566 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 141 545 IPR009029 GO:0015936|GO:0016616
Aip10g00052 566 CDD HMG-CoA_reductase_classI 153 556 IPR004554 GO:0004420|GO:0005515|GO:0008299
Aip10g00052 566 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 487 494 IPR023076 GO:0004420
Aip10g00052 566 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 541 554 IPR023076 GO:0004420
Aip10g00052 566 Pfam Hydroxymethylglutaryl-coenzyme A reductase 180 556 IPR002202 GO:0004420|GO:0015936
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00052 Aip-Chr10 499667 503420 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00052 25 562 Lipid Metabolism Gene Families AT1G76490 71.639 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00052 K00021 - gmx:100815480 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00052 10 499667 503420 Aip10g00052 10 499667 503420 ECH