Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g04056 ATGGAGAACATGCAGTCCGCGGAGGAGCTGGTTCGGGAGTTCCTCGTCTTCCGAGGCTTCACCAACACTCTCCAATCCTACGACTCTGAGCTCCGAACCGATCTTGGAAAGGGCTTCCACGTCGATAAGATCCTCGACCTCATCTTCTCCCTCTACGTTCCCAAATTCCAAGCCGATAGGCTCGTTGCCCTCCTCTCCTTCTTTAAGCACTACCTCTCCTCTTCTTCCGAAACCGCACTCCTTTCTACGCTCTCCAAAATCCAAACTTCTCTTCTCCGCTTCTACGTGGTTCACGCCTTGCAAGCCAATCGCAGGGACAGAGTCATCGACTTCTTCGCTGTCCATGGCAGTGACCTCTTGCAACGCTCACAGGATTGGACTCGCTGGTTCGCGATTCCTTATGTTAAGAATCCGAACCTGGATCCTGAATTTCGGGTTTGTTTCTCCAAGGAGTGGTATGAGGCCTTGCATCTTTCTGTCAGAAACTTCTTTAGCGAGATATTCAATGGAACTCATATCCTTCACAATTACTCCTCTAATTCAGAGATGAATGCCACCAACGTACTCAAAAAAGATATCCTGAATCTGAATATTAAATTGGCAGAGCTTCAGGCTTTGCTTGATGAGAAAGAGGCGAAATTATCACACTATAGGAGTATGGAAGGAAGCATTAGTTCATTGAGCAATTTGCGGGAGGAAAGTTCTCAGATGTCAAGAGGTTTTCCAGAGGTTTCCCCAACTGCTGTTCCACGAGCAGTTCAAACAGAAATTAACCAAGATTCAGTTGTGAATGGAGCTGCAAATATTCAGTCTGAGTATGTCATTTCCAAGTCAGGTGATAATTCAACTGTGGCATTGAATGACCGTGTTGGAAATGGTGGATCAGGCGATACCATGCAAACAGTTCATGAAAAAATTAGTGGAGAAGTTTGTGGTGAAGAAGATTTTCCTGATGTCAAAGTAGAGCACCAGGAGACGTTCTTGGGGCACACTAGTCCAATCAGCCGATGTTGCTTCTCTGCTTCCGGGAACAATATCGCTAGTGCTTCTCTAGATGGAACTGTTAGAATATGGACATATGATTCATCAACTCCGGTGTCTAGAAATGCAACCATATATTGTGGCACGGAAATTTTGTCTCTTGACTGGGAATGTAAATCTGACCGCTTGCTGTTAATAGGTACATCAGATGGGTGTATTAAGGCATGGAATGTAGATGCAAAGAGAGTTGTTTGTGATCTCAATACAACTCAAGCATTTCCAAGTGTCTTGGACATAAAGTGCAGTCCTGTGGAACCTATTTTTGTATCTGCAGCAGGATCTGGAGGTGCTGGTTCCAATTATTTTGACAACCTGGGTTTTGCTTCTCTCACTGTGTGGAACATGAAGACGTGGAAACCCATGACAGTCCTTCCTCTTGGAGAAGATCCACCAGCTATTACTTCTCTATGCTTTAATCACAATGGAAAGATTTTAGCTGCTTCTGCTGTTGATGGAATGATCCACATGTTTGCCAAAGACATGTCTGCTGGCCTACAAATTACTGGCTGGCCTGCACATGATTCTTCTATCAGTTCTATTCTTTTTGGACCGGATGAGACTAGCATTTTTAGCCTGGGCTCTGACAGGAAGGCAAGTACTATAATTTTGCAAAATCAAGGTCAAATTCTATGGTCAAGAGACTGCAGTAGGTTCTCTTACCCTCTGAAAGGTTCACAATATTGCAGACATGAGATGGCATTAGATGCAAGTGGGAGAAGACTCTTGGTAACGTCTAGTTCAGTTAGAGCCCCCATATACCAGGTTCAAGGTCATTTAAATGGTTGGAGAACACTTCCTCATGGTGCTCCTATTACTGCTGTGGATTGGCATCCTACCTCGCCCATTTTCCTGACTGGATCAGCTGATAACTCTGTCCGAGTGACATCTTTATCATAG 1938 0.4458 MENMQSAEELVREFLVFRGFTNTLQSYDSELRTDLGKGFHVDKILDLIFSLYVPKFQADRLVALLSFFKHYLSSSSETALLSTLSKIQTSLLRFYVVHALQANRRDRVIDFFAVHGSDLLQRSQDWTRWFAIPYVKNPNLDPEFRVCFSKEWYEALHLSVRNFFSEIFNGTHILHNYSSNSEMNATNVLKKDILNLNIKLAELQALLDEKEAKLSHYRSMEGSISSLSNLREESSQMSRGFPEVSPTAVPRAVQTEINQDSVVNGAANIQSEYVISKSGDNSTVALNDRVGNGGSGDTMQTVHEKISGEVCGEEDFPDVKVEHQETFLGHTSPISRCCFSASGNNIASASLDGTVRIWTYDSSTPVSRNATIYCGTEILSLDWECKSDRLLLIGTSDGCIKAWNVDAKRVVCDLNTTQAFPSVLDIKCSPVEPIFVSAAGSGGAGSNYFDNLGFASLTVWNMKTWKPMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFAKDMSAGLQITGWPAHDSSISSILFGPDETSIFSLGSDRKASTIILQNQGQILWSRDCSRFSYPLKGSQYCRHEMALDASGRRLLVTSSSVRAPIYQVQGHLNGWRTLPHGAPITAVDWHPTSPIFLTGSADNSVRVTSLS 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g04056 645 Gene3D - 453 558 IPR015943 GO:0005515
Aip09g04056 645 Gene3D - 184 446 IPR015943 GO:0005515
Aip09g04056 645 Gene3D - 559 645 IPR015943 GO:0005515
Aip09g04056 645 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 327 362 - -
Aip09g04056 645 ProSiteProfiles Trp-Asp (WD) repeats profile. 611 645 IPR001680 GO:0005515
Aip09g04056 645 Coils Coil 193 220 - -
Aip09g04056 645 Pfam WD domain, G-beta repeat 324 358 IPR001680 GO:0005515
Aip09g04056 645 Pfam WD domain, G-beta repeat 604 641 IPR001680 GO:0005515
Aip09g04056 645 Pfam WD domain, G-beta repeat 477 503 IPR001680 GO:0005515
Aip09g04056 645 ProSiteProfiles Trp-Asp (WD) repeats profile. 327 368 IPR001680 GO:0005515
Aip09g04056 645 PANTHER OS05G0299300 PROTEIN 1 644 - -
Aip09g04056 645 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 611 645 - -
Aip09g04056 645 SUPERFAMILY WD40 repeat-like 318 641 IPR036322 GO:0005515
Aip09g04056 645 SMART WD40_4 605 643 IPR001680 GO:0005515
Aip09g04056 645 SMART WD40_4 464 505 IPR001680 GO:0005515
Aip09g04056 645 SMART WD40_4 510 552 IPR001680 GO:0005515
Aip09g04056 645 SMART WD40_4 320 359 IPR001680 GO:0005515
Aip09g04056 645 SMART WD40_4 365 404 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g04056 Aip-Chr9 146809174 146852991 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g04056 K24760 - gmx:100788591 1001.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g04056 09 146809174 146852991 Aip09g04056 09 146809174 146852991 ECH