Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g04014 ATGGAGTCTGAAGTAGTTCGTAGTCATCAAGAACAAGATGAGAATGATGAACAACAACCACCCTTCAATGATTCTGCTTCACAACTCGAAGAACAACATAGTGATCCTGAGAAGAAGTCATCGGTTCTGAACAAGGTGAAGGCAAGGGCTAAGAAGATTAAGGATACAGTAAAGAAGCATGGTCAACGAGTCCTTGATCATGTTCATGACAATAGCAGTAGTGAAGATCAGAACAGTCCTGTTCATCATGACATCAATGAGCCTGAAAACCAACAAGTTGATAGAGCATTAGTTGATGAAAGTGGAGATGTTAAAGATGCTCCGCCAACGTATCAACAAGTCGAAAATTATGTTAAAAATGCTGCAACGGAATCTGAGCAAGTAGAAAATTTGGGCAAGTCAGAAGCCAATTATGGTGGCACAACAAATATGGGAGAAGAACCTCAGGACAAGGCAGGAACTGTAGGTGTTGTTTCTCCAACTGATGAAAACATAGCCACTGAGGAAGAGAAGGAAGGGCATTCTAAGGACACTTTGGAGAACATATCTGAGGCATACGCTACTACTCGAAATTATCAAACTGGAACAGTTGGTGAAAGTGAAGCTGTTCAAAGTTCTCCCCCAACATATGAGCAAGTGGAAGATTTTGTTAAAAGTGGTGAACCAGAACCTGAGCAAGTTGAAAATCTGGACAAGACAGTACCAAGTTCTGGAGGTACAACACCATTTGTGGGAGAAGAACCTCATCACCAGCCAAGAGTTGTTGGTGCTTCTCCAACTACAGAAACTAATGAAGACATAACCACTGAACCAGCTAAAGCATTTGCTGAGGAAGAGAAATTTAAGGGAAATTTGGAGAATCCAACAAGCTTGGGTGAAGAACTGCACCCGCCGGGAAGTAGGCCTGAGGCATACACTATTCCTCCCAGTTATCAAACAGAAGACACTGATTCAACAGGGAAAGGTCCTGATGATGAAATAAAGATTAAAGAAGTGGAGAAATCTTTTGAGGAGAAGATCAAAGATGATCCAAAGTCTGTTCTAGTGCCAAAATTCCTGCCAGATTCTGCTGAAACTCAAGACTCTTCTGATGGAAACAAAGATCAATCTGAGCAAAAGCCAGAGCCTCAACTCTCAAGTGCAACTAAAACCGAGCACCCTCCTGATCATGAAAACCATGAACGAGACTTGCCAGAGCTTGTGCAAGAGAAGGAAACTCAGTTTGCTTCAGATACTATATCCTCAAGTACCAGCAGCCACAGGGAAAATCCTGAAGCAACTGAACAAACTTTCAACAGCAACATATCCAGAGATGAAATGGAGAATCCATCAAAGGAAAAGAGTTACTCAGATGAGATATCATCTGCCACTTCTGCAATTGCTGCTGATAGGGCTATCTCTGCTGAAGGTGTTGCTGCTGTTCCTAAGAGTGATCATGGAGAGAAAGGTGATGGAGAGGGAAAACGTGAGGATTCTTCTAACAAGTCAGGAAAGAACATTGCTACCTCTGTGACAGAGAAACTTGCTCCAGTTTATGGGAAGGTTGCTGGTGTGGGAAGTGCAGTGAAGTCTAAAGTGTCCGGAACCAGATCAGAAGACAGTGTTGGAGTTGAAACAGAAAATGTGGAGAAAGGAGAAGACAAAAGGGTGAATGTGAAGGACTATTTGGCTGAGAAGCTAAAGCCTGGTGAAGAAGACAAGGCACTTTCTGAGGTGATTTCAGAAGCTTTTAACAAGCGTAAAGAAGATCCAAAGAAGGCTTCTGAGGGTGAGGATAGGGATGTGGATGCTATAAAGAAGCAAGGAGAAGAGACAGTGGCTGAAACTGAAGAGAGCAATGTGAGTAGTCCAGGAAAAAGTGTGGTTGGTAAGATTAAAGGTGTTGTTGGCTCTTGGTTTGGCAAATCAGAGGAGAATCAATCATCATCAAAGGGAGGTGAAGATTTAACATTGAACAAGAATAGTGGTGAAATCCAGGCTGAAGCACCTGCAACGCTGTCTCGATCAAAACGCCAAAGTATCGTTCAACACGTAACCCTTTTAGGTCCAAGAATAGTTCACAAAATTCCCCATTGCTTGATTATGTCACGGAAATTATGTGACGGTAGTTTCCTTGGTGATGATGGGTTTGAATGCGTCGAGGAACCTTTAAAAAGGATAGTTTCGGAGTATGATTCCAACGAGGGTGAAAGGCTCCATGTGGATGAGGATTGGAGCTGTAACCATAATCAGTTTTCGCTTAGAAGAGGGTTCTTAGAAAACGTGAAGCTAGATGCCAAGAAGGTCCTTGAGGTTCTTCGACAAGATGGACCGGGCCTTGATGCTAGGTTAGTTTTAGATGAATTGAATGTAAGTCCGTCCGGGATTCTTGTCAGAGAAGTTCTCGCTGGAATCTTGAAGAGCATAAATTTTGAGAATAAAACCAGGTGTGCCAAATTGGCATACAAGTTTTTCGTGTGGTGCAATCAGCAGGAGGACTACAGACCCACTTCAAATGCATATCACTTGATGATGAACATATATGCTGAGTGCCTGGAGTTTAAGGCGTTGTGGAGGTTGGTTGATGAGATGATTGAGAAAGGGTTTCCTGCTACTGCTCGTACGTTCAACATTTTGATTCGAACTTGTGGTGAGGCAGGTTTAGCTAAGAAATTGGTGGAGAGGTTTATTAAATCAATGACTTTTAATTATAGGCCTTTTAAGCACTCCTACAATGCGATTCTGCATGGTCTTTTTGTGTTACGCCAGTACAAGTTGATTGAGTGGGTTCATCAACAAATGTTGCTGGAGGGTTTTTCTTCAGATGTTTTAACATACAATATTGTCATGTTTTCTAAGTACAAACTTGGAAAGATGGATCAGTTCCACATACTGCTTGATGAGATGGGTAGGAATGGATTTTCTCCAGATTTTCACACCTATAACATTCTTCTTCATGTCCTTGGTAAAGGAGACAAGCCCCTTGCAGCTCTTAATCTTCTAAATCTCATGAGAGAAACAGGTATAGAGCCAACAGTGCTTCATTACACCACATTGATAGATGGACTCAGCAGAGCTGGGAATGTGGATGCATGCAAATACTTTTTTGATGAAATAATAAAGAATGGGGGCACGCCTGATGTGGTGGCTTACACTGTAATGATAACAGGATATGTAGTGGCAGGTGAGCTTGAGAAAGCTCTGGAAATGTTTCGAGAGATGATTTCTAGAGAACAGGTCCCAAATGTGTTTACATACAATTCCATAATTCGGGGATTATGTAAGGCACGAAAGTTCAAGGAAGCCTGCTCAATGCTCAAGGAGATGGAGACCAAAGGTTGTAGTCCAAATTTTGTTGTCTATAATACATTAGTGAGTAGTTTGCGCAATGCCGGAAGAACCAACGATGCTCATGAAGTGATAAAACAGATGATGGAGAAGCGGAAGTATGCTCACATACTTTCGAGGTTTCAAAAGGACTAA 3462 0.4206 MESEVVRSHQEQDENDEQQPPFNDSASQLEEQHSDPEKKSSVLNKVKARAKKIKDTVKKHGQRVLDHVHDNSSSEDQNSPVHHDINEPENQQVDRALVDESGDVKDAPPTYQQVENYVKNAATESEQVENLGKSEANYGGTTNMGEEPQDKAGTVGVVSPTDENIATEEEKEGHSKDTLENISEAYATTRNYQTGTVGESEAVQSSPPTYEQVEDFVKSGEPEPEQVENLDKTVPSSGGTTPFVGEEPHHQPRVVGASPTTETNEDITTEPAKAFAEEEKFKGNLENPTSLGEELHPPGSRPEAYTIPPSYQTEDTDSTGKGPDDEIKIKEVEKSFEEKIKDDPKSVLVPKFLPDSAETQDSSDGNKDQSEQKPEPQLSSATKTEHPPDHENHERDLPELVQEKETQFASDTISSSTSSHRENPEATEQTFNSNISRDEMENPSKEKSYSDEISSATSAIAADRAISAEGVAAVPKSDHGEKGDGEGKREDSSNKSGKNIATSVTEKLAPVYGKVAGVGSAVKSKVSGTRSEDSVGVETENVEKGEDKRVNVKDYLAEKLKPGEEDKALSEVISEAFNKRKEDPKKASEGEDRDVDAIKKQGEETVAETEESNVSSPGKSVVGKIKGVVGSWFGKSEENQSSSKGGEDLTLNKNSGEIQAEAPATLSRSKRQSIVQHVTLLGPRIVHKIPHCLIMSRKLCDGSFLGDDGFECVEEPLKRIVSEYDSNEGERLHVDEDWSCNHNQFSLRRGFLENVKLDAKKVLEVLRQDGPGLDARLVLDELNVSPSGILVREVLAGILKSINFENKTRCAKLAYKFFVWCNQQEDYRPTSNAYHLMMNIYAECLEFKALWRLVDEMIEKGFPATARTFNILIRTCGEAGLAKKLVERFIKSMTFNYRPFKHSYNAILHGLFVLRQYKLIEWVHQQMLLEGFSSDVLTYNIVMFSKYKLGKMDQFHILLDEMGRNGFSPDFHTYNILLHVLGKGDKPLAALNLLNLMRETGIEPTVLHYTTLIDGLSRAGNVDACKYFFDEIIKNGGTPDVVAYTVMITGYVVAGELEKALEMFREMISREQVPNVFTYNSIIRGLCKARKFKEACSMLKEMETKGCSPNFVVYNTLVSSLRNAGRTNDAHEVIKQMMEKRKYAHILSRFQKD 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g04014 1153 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1075 1109 IPR002885 -
Aip09g04014 1153 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 970 1004 IPR002885 -
Aip09g04014 1153 Pfam PPR repeat 1001 1031 IPR002885 -
Aip09g04014 1153 Pfam PPR repeat 1105 1137 IPR002885 -
Aip09g04014 1153 Gene3D Tetratricopeptide repeat domain 916 1007 IPR011990 GO:0005515
Aip09g04014 1153 Gene3D Tetratricopeptide repeat domain 779 915 IPR011990 GO:0005515
Aip09g04014 1153 MobiDBLite consensus disorder prediction 189 212 - -
Aip09g04014 1153 MobiDBLite consensus disorder prediction 384 402 - -
Aip09g04014 1153 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 677 1152 - -
Aip09g04014 1153 MobiDBLite consensus disorder prediction 59 102 - -
Aip09g04014 1153 MobiDBLite consensus disorder prediction 405 438 - -
Aip09g04014 1153 PANTHER OS10G0506000 PROTEIN 677 1152 - -
Aip09g04014 1153 MobiDBLite consensus disorder prediction 520 548 - -
Aip09g04014 1153 MobiDBLite consensus disorder prediction 113 148 - -
Aip09g04014 1153 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 935 969 IPR002885 -
Aip09g04014 1153 Gene3D Tetratricopeptide repeat domain 1023 1153 IPR011990 GO:0005515
Aip09g04014 1153 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1110 1140 IPR002885 -
Aip09g04014 1153 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1040 1074 IPR002885 -
Aip09g04014 1153 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 830 864 IPR002885 -
Aip09g04014 1153 MobiDBLite consensus disorder prediction 189 456 - -
Aip09g04014 1153 MobiDBLite consensus disorder prediction 1 16 - -
Aip09g04014 1153 Pfam PPR repeat family 1039 1088 IPR002885 -
Aip09g04014 1153 Pfam PPR repeat family 935 981 IPR002885 -
Aip09g04014 1153 TIGRFAM PPR: pentatricopeptide repeat domain 1009 1041 IPR002885 -
Aip09g04014 1153 TIGRFAM PPR: pentatricopeptide repeat domain 1112 1140 IPR002885 -
Aip09g04014 1153 TIGRFAM PPR: pentatricopeptide repeat domain 1042 1076 IPR002885 -
Aip09g04014 1153 TIGRFAM PPR: pentatricopeptide repeat domain 972 1006 IPR002885 -
Aip09g04014 1153 TIGRFAM PPR: pentatricopeptide repeat domain 1077 1110 IPR002885 -
Aip09g04014 1153 MobiDBLite consensus disorder prediction 30 50 - -
Aip09g04014 1153 MobiDBLite consensus disorder prediction 318 348 - -
Aip09g04014 1153 MobiDBLite consensus disorder prediction 475 495 - -
Aip09g04014 1153 MobiDBLite consensus disorder prediction 469 505 - -
Aip09g04014 1153 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1005 1039 IPR002885 -
Aip09g04014 1153 MobiDBLite consensus disorder prediction 576 598 - -
Aip09g04014 1153 MobiDBLite consensus disorder prediction 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g04014 Aip-Chr9 146496625 146501794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g04014 827 1140 Glycosyltransferase AT1G05670 26.115 3.12e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g04014 - - adu:107466922 1159.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g04014 09 146496625 146501794 Aip09g04014 09 146496625 146501794 ECH