Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g04006 ATGGGAAAGCAAAAGCAGCAAGTCATTTCACGTTTTTTCGCTCCCAAACCTAAAGCCTCTCCATCAACAACTGATCCAACACATTCTTCACCTCCTCCTTCTCCTCTTCCTTCCTCTTCTCGCCCTAATCCTCCAACCCCCAAAATCTCCGCCACCGTCACTTTCTCACCATCCAAACGGCTTCTTACTTCTCAAATCACTTCCCCCAACAAGCCACCAAAGCTCCCCAAACTCTCCCCCCACACTCACAACCCTCTTCCCCACCCCACCACCCATCAGCGCTTCCTCCAGAAACTTCTAGAACCTTCTGAGCCCGAGCCACCTTCCCATTCTTCTGCCAAACCCTTAAAGTACACTCCTTTGGAGGAGCAAGTGGCCGAGCTCAAAGGAAAGTACCCTGATGTTCTTTTGATGATCGAGGTTGGATACAGGTTCCGTTTTTTCGGCCAAGATGCTGAAAATGCTGCCAGGGTATTGGGTATATATGCGCATATGGATCGTAACTTTTTAACTGCTAGCATACCAACTTTTCGATTGAATGTCCATGTGAGGAGGCTTGTGAGTGCTGGCTATAAGGTTGGTGTGGTTAGGCAGACTGAGACAGCGGCTATTAAGGCTCATGGTTCAAACCGGCTAGGCCCATTTTGCAGGGGATTATCAGCATTGTACACGAAGGCCACACTGGAGGCAGCACCGGATTTGGGGGGAGGGGAAGAGGGGTGTGGGGCAGAGAGCAATTACTTGATGTGTGTGGTGGAGAAGAGCATTTTGGGAGAGAGGTCTGCGTGTGGGGTGGAGGGTAATTTTGATGTGAGGATTGGATTTGTTGCAGTGGAGATATCAACAGGGGATGTTATTTATGGGGAATTCGATGACAATTTCTTGAGGAGTGCACTTGAGGCTGTGATGTTGAACTTATCTCCCGCTGAGTTGCTTCTTGGGGACCCTCTTTCCAAACAAACGGAGAAGTTATTGCTGGCTTTTGCTGGTCCTGCTTCAAACGTTCGTGTGGAGCGAACCTCTCGAGATTGCTTCGCTGATGGAGGTGCTCTTGCAGAAGTCTTGACCTTGTATGAGAACATGGGTATAGGATGTTCATCAGATTCAATGCAAAACAAAGATTTGACCGAGCACACTAATCAGCCATTAGTTAAGGAGGTGATGAACATGCCAGATTTGGCAGTCCAATCTTTGGCCTTAACAATTCACCATTTAAAGGAATTTTGTTTTGAAAGAATTGTATGCTCAGGTTTTTCTTTAAGGCCATTCTCAAGAAATATGGAAATGACCTTTTCAGCCAATGCGCTTCAACAACTGGAGATTTTAAAAAATAATAGTGATGGATCTGAGAACGGGTCCTTGCTGCAAATTATGAATCGCACCCTTACTATATTCGGTTCCAGGCTTCTTAGGCATTGGGTATCTCACCCATTATGCGATCAGACCATGATTTCTGCTCGTCTTCATGCTGTATCTGAAATTGCAGAGTCCATGAGCTCTTGTAGCATGAAGAGCCTAGAGTATGACGAAGACTCTGATGTAACAATTGTGCATCCCGAGTTAGCTTACATAGTTTCTTTGGTTTTGACGAATCTGAGCCGAGCACCTGATTTACAACGCGGGGTTACAAGAATATTCCATTGCACTGCTAAGCCAGTTGAGTTTGTTGCAGTTATTCAAGCTATTTTGTCAGCTGGAAAACAGCTTCAGCAACTTAACATATGCGAGGAGGAAAACAATAATTTGCATTCTAATCTGTTGAGAAGACTGATTCTGACTGCCTCCTCTGACAGTGTTATTGGCAATGCTACAAAAATGTTGTCTTCTTTAAACAAAGAATCTGCTGATCAAGGCGATCTAACAAATTTGATCATTGCATCTGAGGCACAATTTCCAGAGGTTACTAGAGCTCGGAAAGCTTTTCAAATGGAAGAGGAACAATTAAATTCATTGATCGGCTTGTATCGCAAGCGCCTTGGAATGCGGAAATTGGAATTCATGAGTGTTTCTGGAATTACTCATTTGATAGAGTTGGAGACTGATGTTAAGGTTCCTTTAAACTGGGTTAAGGTTAATAGTACAAAGAAAACAATTCGGTATCACCCTCCTGAAGTGGTGACAGCATTGGACAAGGTATCTTTAGCAAAAGAAGAGCTTACTATTGCCTGCCGAACTGCTTGGGATAGCTTTCTGAGGGATTTCAGTAAACACTATGCTGAGTTCCAAGCTGCTGTTCAAGCTCTGGCGGCTTTAGACTGCCTGCATTCCCTTGCCATTCTTTCAAGAAATAAGGGGTATGTTCGGCCAGTGTTTGTAGATGATTGTGAGCCTGTTCAGATACAAATTTGTGCTGGTCAGCATCCGGTTTTGCAGACTACCTTACAAGACAACTTTGTCCCAAATGATACAAACTTGCATGCTGACAGAGAGTACTGCCAGATTGTCACTGGACCCAATATGGGGGGGAAAAGTTGCTATATTCGCCAGGTGGCATTGATTGCTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTGCATGTCCTGGACAGGATCTACACTCGGATGGGTGCTTCTGACAGTATTCAGCAAGGGAGAAGCACCTTCCTAGAAGAACTGTCTGAGACTTCAAATATTCTTCATAACTGCACAGAAAATTCACTGGTTATCATTGATGAGCTTGGGAGAGGTACAAGTACACATGACGGTATGGCCATTGCTTATGCGACATTGCACTATCTTCTGAAGCAAAAGCGAAGCATCGTCCTCTTTGTCACTCATTATCCGAAGATTGCAGACCTCACAACCGAATTCCCTGGCTCTGTGGGAGCATATCACGTGTCACATCTAACCTCACATCATGATACAAGTAAAAACAAAAACTCTTGTCTTGATAATATAACTTATCTATACAAGCTCGTACCTGGTGTTTCAGAGAGAAGCTTCGGATTTAAGGTGGCTCAGCTAGCACAGTTACCACCACATTGCATTACTCGTGGCATTTTCATGGCTTCCAAATTGGAAGAGCTAGTGAACAATAGAATACATAGTAGATCGGTGAAGGAGCTGTTGTTGGATGCAATAGTGATTGGTCAAGAACAGGAATCACATCAAGAGTTTGGTAGTGCTTACAAGGAACTCTATTCAAACTTAAAAGCTGCAATTCTAGATGATGACCATGCAAAAAGCTTTCAGCTTCTGGATCATAGCAGAAAAATTGCAAAGAAATTAATTGGCAGACACTAA 3258 0.4401 MGKQKQQVISRFFAPKPKASPSTTDPTHSSPPPSPLPSSSRPNPPTPKISATVTFSPSKRLLTSQITSPNKPPKLPKLSPHTHNPLPHPTTHQRFLQKLLEPSEPEPPSHSSAKPLKYTPLEEQVAELKGKYPDVLLMIEVGYRFRFFGQDAENAARVLGIYAHMDRNFLTASIPTFRLNVHVRRLVSAGYKVGVVRQTETAAIKAHGSNRLGPFCRGLSALYTKATLEAAPDLGGGEEGCGAESNYLMCVVEKSILGERSACGVEGNFDVRIGFVAVEISTGDVIYGEFDDNFLRSALEAVMLNLSPAELLLGDPLSKQTEKLLLAFAGPASNVRVERTSRDCFADGGALAEVLTLYENMGIGCSSDSMQNKDLTEHTNQPLVKEVMNMPDLAVQSLALTIHHLKEFCFERIVCSGFSLRPFSRNMEMTFSANALQQLEILKNNSDGSENGSLLQIMNRTLTIFGSRLLRHWVSHPLCDQTMISARLHAVSEIAESMSSCSMKSLEYDEDSDVTIVHPELAYIVSLVLTNLSRAPDLQRGVTRIFHCTAKPVEFVAVIQAILSAGKQLQQLNICEEENNNLHSNLLRRLILTASSDSVIGNATKMLSSLNKESADQGDLTNLIIASEAQFPEVTRARKAFQMEEEQLNSLIGLYRKRLGMRKLEFMSVSGITHLIELETDVKVPLNWVKVNSTKKTIRYHPPEVVTALDKVSLAKEELTIACRTAWDSFLRDFSKHYAEFQAAVQALAALDCLHSLAILSRNKGYVRPVFVDDCEPVQIQICAGQHPVLQTTLQDNFVPNDTNLHADREYCQIVTGPNMGGKSCYIRQVALIAIMAQVGSFVPASSAKLHVLDRIYTRMGASDSIQQGRSTFLEELSETSNILHNCTENSLVIIDELGRGTSTHDGMAIAYATLHYLLKQKRSIVLFVTHYPKIADLTTEFPGSVGAYHVSHLTSHHDTSKNKNSCLDNITYLYKLVPGVSERSFGFKVAQLAQLPPHCITRGIFMASKLEELVNNRIHSRSVKELLLDAIVIGQEQESHQEFGSAYKELYSNLKAAILDDDHAKSFQLLDHSRKIAKKLIGRH 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g04006 1085 SUPERFAMILY DNA repair protein MutS, domain I 113 227 IPR016151 GO:0005524|GO:0006298|GO:0030983
Aip09g04006 1085 SUPERFAMILY DNA repair protein MutS, domain III 433 763 IPR036187 -
Aip09g04006 1085 Pfam MutS domain I 119 229 IPR007695 GO:0005524|GO:0006298|GO:0030983
Aip09g04006 1085 MobiDBLite consensus disorder prediction 26 44 - -
Aip09g04006 1085 Gene3D MutS, connector domain 242 428 IPR036678 GO:0005524|GO:0006298|GO:0030983
Aip09g04006 1085 Pfam MutS domain V 813 1010 IPR000432 GO:0005524|GO:0006298|GO:0030983
Aip09g04006 1085 SUPERFAMILY DNA repair protein MutS, domain II 244 325 IPR036678 GO:0005524|GO:0006298|GO:0030983
Aip09g04006 1085 Pfam MutS domain II 246 331 IPR007860 GO:0005524|GO:0006298|GO:0030983
Aip09g04006 1085 MobiDBLite consensus disorder prediction 1 92 - -
Aip09g04006 1085 MobiDBLite consensus disorder prediction 45 72 - -
Aip09g04006 1085 PIRSF Msh6 2 108 IPR017261 GO:0006298|GO:0030983
Aip09g04006 1085 PIRSF Msh6 107 1062 IPR017261 GO:0006298|GO:0030983
Aip09g04006 1085 Pfam MutS domain III 434 758 IPR007696 GO:0005524|GO:0006298|GO:0030983
Aip09g04006 1085 Gene3D DNA repair protein MutS, domain I 109 233 IPR016151 GO:0005524|GO:0006298|GO:0030983
Aip09g04006 1085 Gene3D - 766 1047 IPR027417 -
Aip09g04006 1085 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 99 1080 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Aip09g04006 1085 Gene3D - 433 758 - -
Aip09g04006 1085 SMART mutATP5 810 1009 IPR000432 GO:0005524|GO:0006298|GO:0030983
Aip09g04006 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 766 1013 IPR027417 -
Aip09g04006 1085 ProSitePatterns DNA mismatch repair proteins mutS family signature. 891 907 IPR000432 GO:0005524|GO:0006298|GO:0030983
Aip09g04006 1085 Gene3D - 608 734 - -
Aip09g04006 1085 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 99 1080 - -
Aip09g04006 1085 SMART DNAend 449 793 IPR007696 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g04006 Aip-Chr9 146461642 146467911 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g04006 K08736 - gmx:100789883 1583.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g04006 09 146461642 146467911 Aip09g04006 09 146461642 146467911 ECH