Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03809 ATGGAGCTATCTCTGATTGGCCTTCAGAATGCTGGCAAAACTTCCCTTGTAAATGTTATTGCGACTGGTGGATTTAGCCAAGACATGATCCCGACGGTAGGATTTAACATGAAAAAGGTAACCAAAGGGAATGTGACAATCAAATTATGGGACCTTGGAGGCCAACCAAGGTTTCGCAGTATGTGGGAGAGATACTGCCGTGCTGTTTCAGCTATTGTTTATGTTGTTGATGCAGCTGATCATGACAACATACCTATCTCTAGAAATGAGCTTCATGACTTGTTGAGCAAGCATTCTTTAAATGGCATTCCCCTGTTGGTTCTTGGTAACAAGATCGACAAACCAGGGGCTTTGTCTGAGCAAGAGCTGATGGAGCAAATGGAACTAAAATCCATCAATGAAAGAGAAGTTTCTTGCTACATGATCTCATGTAAAAACTCCACAAACATTGACACAGTTGTTGATTGGCTTATTAAACATTCAAAATCAAAGAATTGA 498 0.4056 MELSLIGLQNAGKTSLVNVIATGGFSQDMIPTVGFNMKKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADHDNIPISRNELHDLLSKHSLNGIPLLVLGNKIDKPGALSEQELMEQMELKSINEREVSCYMISCKNSTNIDTVVDWLIKHSKSKN 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03809 165 CDD Arl10_like 2 160 IPR044154 GO:0003924|GO:0005525|GO:0015031
Aip09g03809 165 PRINTS GTP-binding SAR1 protein signature 58 83 IPR006689 GO:0003924|GO:0005525
Aip09g03809 165 PRINTS GTP-binding SAR1 protein signature 2 25 IPR006689 GO:0003924|GO:0005525
Aip09g03809 165 PRINTS GTP-binding SAR1 protein signature 103 124 IPR006689 GO:0003924|GO:0005525
Aip09g03809 165 Gene3D - 1 165 IPR027417 -
Aip09g03809 165 TIGRFAM small_GTP: small GTP-binding protein domain 3 156 IPR005225 GO:0005525
Aip09g03809 165 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8A 1 165 - -
Aip09g03809 165 ProSiteProfiles small GTPase Arf family profile. 1 161 - -
Aip09g03809 165 SMART sar_sub_1 1 161 IPR006689 GO:0003924|GO:0005525
Aip09g03809 165 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 1 165 - -
Aip09g03809 165 SMART arf_sub_2 1 165 - -
Aip09g03809 165 Pfam ADP-ribosylation factor family 4 159 IPR006689 GO:0003924|GO:0005525
Aip09g03809 165 SMART rab_sub_5 1 164 - -
Aip09g03809 165 ProSiteProfiles small GTPase SAR1 family profile. 1 165 - -
Aip09g03809 165 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 163 IPR027417 -
Aip09g03809 165 ProSiteProfiles small GTPase Rab1 family profile. 1 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03809 Aip-Chr9 144751526 144752999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03809 5 153 Miscellaneous Gene Families AT5G05670 29.375 2.76e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03809 K07955 - cit:102631088 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03809 09 144751526 144752999 Aip09g03809 09 144751526 144752999 ECH