Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03796 ATGCCCCCAATGGCGTCCTCTCTGTTATTACCGCTCTCTGCACCCTCCTCCTTCATTGACGATTCCGCAGCTTCTTCTCTGCGCACCTTTCTCCATGGAACCAAGCTCCTTCCTTCTCCCGCCAGACCCAGACTTCCACGTGGTTGCACCTTCAAGTCTCCTTCTGCCAAGTCCTCTTCTTTCGACCACATCCCCAAGCAGTTCCGCCAGGAAAATCTCAAGGACGGATTGATGGATAACTACAAGAATGCACCTCAATCTCTATATGGCCTCACTCCTTCACAAATGGACATGTTCATGACTGAAGATAATCCTATCCGCCAGCAGACTGAAAGAGTTACAGAGGAAAGCATCTCATCTGCCAGAAATTATTTGGATCATGGTGGGATGTGGAGTCTATCTGACTTCGGTGATAAGGGCCCTTCAAAATACAGCATGAGTGTCAGTATGTACCGGGGAGGAGGTAGAGGAACTGGAAGGCCTAGAACTGCTCCACCGGATTTGCCGTCGTTGCTCTTGGATGCTCGGATATGCTATCTGGGTATGCCGATTGTACCAGCTGTCACAGAACTTCTTATTGCTCAGTTTATGTGGCTGGATTATGATAATCCGGCCAAACCTATATACTTGTATATCAATTCATCTGGGACTCAGAATGAGAAGAATGAGACTGTGGGATCTGAAACTGAGGCATATTCTATAGCTGATATGATGTCTTATGTCAAATCAGATGTCTATACTGTGAATTGTGGCATGGCATATGGTCAGGCAGCAATGCTTCTGTCGCTTGGAGCAAAGGGTTATCGCGCTGTACAGCCAAATTCATCTACAAAATTGCATCTACCAAAAGTCAACAGATCCAGTGGTGCTGTTATAGATATGTGGATTAAGGCAAAAGAACTGGAGGCAAATAGTGAGTCTTACATCGAGCTGTTGGCTAAAGGAACAGGGAAATCTAAGGAAGAAATTGCTAAAGATGTCCAGAGGCCTAAATATTTTCGGGCAGCGGAAGCTATTGAGTACGGTCTTGCTGACAAAATAATCGATTCGCAGGACATTGCTTTTGACAAACGGAATTATGATGAAATGCTTGCTCAATCACGAGCTATGAGAAGACAAGGTGGTGCTAACCCTCAAGTGTCTCCTTCGGGACTTGGGTAA 1161 0.4582 MPPMASSLLLPLSAPSSFIDDSAASSLRTFLHGTKLLPSPARPRLPRGCTFKSPSAKSSSFDHIPKQFRQENLKDGLMDNYKNAPQSLYGLTPSQMDMFMTEDNPIRQQTERVTEESISSARNYLDHGGMWSLSDFGDKGPSKYSMSVSMYRGGGRGTGRPRTAPPDLPSLLLDARICYLGMPIVPAVTELLIAQFMWLDYDNPAKPIYLYINSSGTQNEKNETVGSETEAYSIADMMSYVKSDVYTVNCGMAYGQAAMLLSLGAKGYRAVQPNSSTKLHLPKVNRSSGAVIDMWIKAKELEANSESYIELLAKGTGKSKEEIAKDVQRPKYFRAAEAIEYGLADKIIDSQDIAFDKRNYDEMLAQSRAMRRQGGANPQVSPSGLG 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03796 386 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 1, CHLOROPLASTIC 53 375 - -
Aip09g03796 386 SUPERFAMILY ClpP/crotonase 162 352 IPR029045 -
Aip09g03796 386 MobiDBLite consensus disorder prediction 38 65 - -
Aip09g03796 386 Pfam Clp protease 170 350 IPR023562 -
Aip09g03796 386 Gene3D - 156 356 - -
Aip09g03796 386 PRINTS Clp protease catalytic subunit P signature 167 182 IPR001907 GO:0004176|GO:0004252|GO:0006508
Aip09g03796 386 PRINTS Clp protease catalytic subunit P signature 207 227 IPR001907 GO:0004176|GO:0004252|GO:0006508
Aip09g03796 386 PRINTS Clp protease catalytic subunit P signature 247 264 IPR001907 GO:0004176|GO:0004252|GO:0006508
Aip09g03796 386 PRINTS Clp protease catalytic subunit P signature 268 287 IPR001907 GO:0004176|GO:0004252|GO:0006508
Aip09g03796 386 PRINTS Clp protease catalytic subunit P signature 326 345 IPR001907 GO:0004176|GO:0004252|GO:0006508
Aip09g03796 386 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 53 375 IPR023562 -
Aip09g03796 386 CDD S14_ClpP_2 167 347 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03796 Aip-Chr9 144698078 144701053 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03796 K01358 - jre:109014211 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03796 09 144698078 144701053 Aip09g03796 09 144698078 144701053 ECH