Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03257 ATGTTGCGTGCAAAAAATCAGGCTCTTGTCCAAATGCAAGATGTTGCTTCAGCCGTTAATTCTTTACAATTTTATGCAAATGTTCAGCCAAGCATAAGGGGGAGGAATGTTTATGTCCAGTTTTCCTCACATCAAGAACTAACATCAATGGATCAAAATCAAGGGCGTGGAGATGAGCCAAATCGAATTCTCTTAGTTACAATTCACCACATGATGTATCCTATAACAGTGGATGTGCTATATCAAGTATTTTCTCCCCATGGATCTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGTTTTCAGGCTCTTATCCAGTATCAGTCACGTCAGCATGCTGTTGTCGCGAGAAGTACACTTCAGGGACGCAATATTTATGATGGTTGCTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAACTACAAGTGAACTACAACAATGACCGTTCAAGGGACTTTACGAACCCAAATCTTCCTACAGAGCAGAAAGGCAGACCGTCACAAATGGCCAATGCTGCAGCCATTGCAGCTGCCTTCGGGGGTGGTTTGCCTCCTGGAGTAACCGGGACAAATGACCGATGTACAATTCTTGTCTCAAATCTTAATCCTGATAGAATAGATGAGGATAAGCTGTTCAACTTGTTCTCCATTTATGGGAACATTGTGAGGATTAAGCTTCTCCGGAATAAACCAGATCATGCACTTATCCAGATGGGGGATGGTTTCCAAGCTGAATTGGCAGTGCACTTTCTGAAGGGAGCCACGTTGTTTGGGAAGCGATTAGAAGTCAACTTCTCGAAACATCCTAACATAACCCCAGGTGCTGACACGCATGAGTATGCCAATTCAAACCTCAACCGTTTCAACCGTAATGCTGCTAAGAACTACCGTTATTGTTGCTCCCCGACAAAGATTATCCATTTGTCAACACTCCCCCAAGATGTCACCGAAGATGAGATTCTGAACCTCCTGGAGGAGCATGGAACTATTGTGAACAGCAAAGTCTTTGAGATGAATGGGAAAAAGCAGGCTCTGGTTCAGTTCGAGACTGAGGAACTGGCTACCGATGCTCTTATGATGATGGTCTTCTCCATTATGTTGTTGCTAACATGTTGTAGGCCTAGAATTTGTGATTGTGGAATGGCTAGTTTTCAAGAGAAAAGGGAAGTTCAGCACCATGCATTTTTTCATAGTAGCTGTTCTTACATATTTCCTTCTTACTCCTCTGCTATCATTCTTTCTCTTCATATTCTATTCTTCCTTCTTCTACCTTCTCCTCTGCAAGCACATGGATTGAGAAGATTTCATTATTTCTCCTACTCCTCTACTTACTCTTCTCTCTGCCCTTCACTCCCTTCAGTCAATGTGCTCGGTGGAAAATGGAAACGCCTAATGTCATTGACCTTAGGCCTTGTGAATATGTTTTAA 1434 0.4268 MLRAKNQALVQMQDVASAVNSLQFYANVQPSIRGRNVYVQFSSHQELTSMDQNQGRGDEPNRILLVTIHHMMYPITVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSRQHAVVARSTLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQMANAAAIAAAFGGGLPPGVTGTNDRCTILVSNLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGATLFGKRLEVNFSKHPNITPGADTHEYANSNLNRFNRNAAKNYRYCCSPTKIIHLSTLPQDVTEDEILNLLEEHGTIVNSKVFEMNGKKQALVQFETEELATDALMMMVFSIMLLLTCCRPRICDCGMASFQEKREVQHHAFFHSSCSYIFPSYSSAIILSLHILFFLLLPSPLQAHGLRRFHYFSYSSTYSSLCPSLPSVNVLGGKWKRLMSLTLGLVNMF 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03257 477 Gene3D - 193 289 IPR012677 -
Aip09g03257 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 363 IPR000504 GO:0003723
Aip09g03257 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 282 - -
Aip09g03257 477 SMART rrm1_1 307 377 IPR000504 GO:0003723
Aip09g03257 477 SMART rrm1_1 65 134 IPR000504 GO:0003723
Aip09g03257 477 SMART rrm1_1 197 266 IPR000504 GO:0003723
Aip09g03257 477 SUPERFAMILY RNA-binding domain, RBD 2 56 IPR035979 GO:0003676
Aip09g03257 477 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 169 362 - -
Aip09g03257 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 361 IPR000504 GO:0003723
Aip09g03257 477 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 170 - -
Aip09g03257 477 Gene3D - 60 165 IPR012677 -
Aip09g03257 477 Pfam RRM-like domain 59 138 IPR021790 -
Aip09g03257 477 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 169 362 - -
Aip09g03257 477 CDD RRM3_PTBPH3 195 270 IPR034797 -
Aip09g03257 477 Gene3D - 1 59 IPR012677 -
Aip09g03257 477 Gene3D - 290 395 IPR012677 -
Aip09g03257 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 270 IPR000504 GO:0003723
Aip09g03257 477 SUPERFAMILY RNA-binding domain, RBD 194 363 IPR035979 GO:0003676
Aip09g03257 477 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 170 - -
Aip09g03257 477 SUPERFAMILY RNA-binding domain, RBD 60 161 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03257 Aip-Chr9 138543227 138548885 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03257 K14948 - gmx:100819672 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03257 09 138543227 138548885 Aip09g03257 09 138543227 138548885 ECH