Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01258 ATGTCATTGATTGATTCATTCTCACATAACAAAATGTGGAGCAATATCTTCCTCTTTGCTCTTCTGTTTTCCACTTACAATAATGTTGCAGTCCAAAGCTTTTGCGTTGCAGATCTGAAGGGAGCACAAACCCCTGAAGGGTTCCTTTGCAAGCCACCCACTTCAGTAAAAGTGGATGACTTCATTCTCTCCGGCCTCGAACCTCCCACCACCCCGCCCTCATCCAACTCTTCCAAGATCACACTAACCCCCGCATTTGTCCAGCAAATCCCTGGCCTTAACGGCCTGGGATTCGCCGTGGCGCGGTTGGACATGGATGTAGGGGGTGTAGTCCCATTGCATTCTCACCCAGATGCCTCTGAGATGCTCATAATAGTGCGTGGAACCGTAACTGCTGGATTCATAGCAGCTGATAATTCTGTTTTTGTGAAGACATTGAGAAGCGGTGACGTCATGGTTTTGCCACAAGGGTTGTTGCATTTTCAGTTGAATTCCGGAAATGGAAAAGCCCTAGTTCATCTCGCTTTTAGTAGCTCAAATCCGAGTACACAGTTTCTTGATGTTGCGTTGTTTGGTAGCAACTTGAATTCTGATTTAATCACCAAGACTACGTTACTTGATCTTTTTGAAGTGAAGAAGCTCAAGGCTATTTTTGGTGGCAGTGGATAA 669 0.4559 MSLIDSFSHNKMWSNIFLFALLFSTYNNVAVQSFCVADLKGAQTPEGFLCKPPTSVKVDDFILSGLEPPTTPPSSNSSKITLTPAFVQQIPGLNGLGFAVARLDMDVGGVVPLHSHPDASEMLIIVRGTVTAGFIAADNSVFVKTLRSGDVMVLPQGLLHFQLNSGNGKALVHLAFSSSNPSTQFLDVALFGSNLNSDLITKTTLLDLFEVKKLKAIFGGSG 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01258 222 SMART Cupin_1_3 64 212 IPR006045 -
Aip09g01258 222 CDD cupin_OxOx 31 218 - -
Aip09g01258 222 ProSitePatterns Germin family signature. 109 122 IPR019780 GO:0030145
Aip09g01258 222 PRINTS Germin signature 114 134 IPR001929 GO:0030145
Aip09g01258 222 PRINTS Germin signature 144 164 IPR001929 GO:0030145
Aip09g01258 222 PRINTS Germin signature 177 192 IPR001929 GO:0030145
Aip09g01258 222 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 16 218 - -
Aip09g01258 222 Gene3D Jelly Rolls 27 222 IPR014710 -
Aip09g01258 222 Pfam Cupin 72 207 IPR006045 -
Aip09g01258 222 SUPERFAMILY RmlC-like cupins 32 215 IPR011051 -
Aip09g01258 222 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 16 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01258 Aip-Chr9 20417216 20418006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01258 11 221 Miscellaneous Gene Families AT5G20630 52.133 1.39e-70 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01258 - - adu:107464848 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g01258 09 20417216 20418006 Aip09g01258 09 20417216 20418006 ECH