Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01241 ATGGCGGTTTCTACCATAGCCCTGTACGCAAGCCCACCGAGCAGTGTGTGCTCGACGCCGCACCCATGCCAGATCAATGCCCACGGCTCCTGCGACTTCGATATGGGGTCTCGATCCTCGTCGTCCTCGACGGCGTCGACGTCACAGAAGCCTGTAATGGGGGGTCTCTCGTGCCTCTTCTCTTCGCCGGCGCCAGCGGCCGTGAAGCACGCGCCACTGTCGGGATTCTCCGGGGGCGGTGAGGATCACGGTGGCGGCAGAGGGGATGAACTGAACCTTAAGGAACTCGGGAGCTCCTTCTCATACTCGCCGAGCAAGTTTGGTGGTTCTTCTTGGAAGAGGGACCACCATAGCCCCGTCTCTGTCTTCAACGGCCCCGTTTCGTGTAGCAGCACCGTTGGCTCGTCTTCGAATTTGAGGAGCACCGCGAGTTCCGTGAGGATCGGTGGTGGTTCGGAGAGGGTTGGGACCAGTGGGCTGTTTGATGGGTTCGTGAGGAACGCTTTGGGGTCTTGCTTGGATTACGATTCGGCGAGTTTCAAGGTTGGTGGTTTGGATGAGGGTGATTCTTCGGCTTTGGCTGATGAGTTGACCTTCAATTTGGAGGATACTTTTATGGAGGGTGGGTTTGAGCCTTATGCTAAGAAGTTGCTGCTTGGTGCCCAGTTGAGACACAAGATCTTCTGCGAAGAGTTTGTAATCAAGGCCTTTTGTGAAGCCGAGAAAGCGCACAGAGGCCAGGTGCGTGCTAGTGGGGATCCATATTTGCAGCATTGTTTGGAAACTGCTGTGCTGCTCGCTTTGATTGGAGCAAATTCCACGGTGGTTGCTGCAGGGCTCTTGCATGATACCCTTGACGATGCGTTTCTGACCTATGATTACATATTTGGAACGTTTGGTGCTGGGGTTGCTGATTTAGTTGAAGGGGTTTCTAAATTAAGTCACTTGAGCAAGCTTGCTCGAGAAAACAATACAGCTTGCAAATCAGTTGAAGCAGACCGTCTGCATACCATGTTCCTTGCCATGGCAGATGCAAGAGCTGTGCTTATTAAACTGGCAGATCGATTGCACAATATGATGACTCTGGATGCATTGCCAGTGGCCAAGCAACAGAGGTTTGCAAAGGAGACTTTGGAGATTTTTGCACCTTTGGCAAATCGCTTGGGAATATCTAGCTGGAAAGAACAATTAGAAAATTTATGTTTTAAACATCTCAACCCCGATCAGCATGATGAGCTATCTTCAAAGCTTGTGGATTCATATGATGAAGCCAGGATTACTTCTGCAATTGAGAAATTAGAGCAAGCACTTAAAGATGAAGGCATATCGTATCATGTCGTTTCTGGGCGGCATAAAAGCTTATATAGCATTTATTGCAAAATGTTGAAGAAGAAACTGACAATAGATGATATCCACGACATCTATGGATTGCGCTTGATTGTTGATAAGGAGGAAGACTGTTACAAAGCATTGACAATTGTTCACCAGTTATGGTCTGAAGTACCTGGAAAGCTAAAAGATTACATACGTCGCCCCAAGTTCAACGGGTATCAATCCCTGCATACTGTGGTGATGGGTGAAGGCAAAGTTCCCCTTGAAGTACAAATTCGAACAAAAGATATGCATTTACAAGCTGAATTTGGGTTTGCTGCTCATTGGAGGTACAAGGAAGATGACTGTCAGCATTCTTCATTTGTGCTTCAGATGGTTGAGTGGGCTCGATGGGTTGTCACCTGGCAGTGTGAGGCAATGAGTAAGGATTCTACATCTGTTGGATATGGCGATTCAATTAAGCCTCCATGCAAGTTCCCTTCCCATGTTGATGACTGTCCATATTGTTATAAGCCCGACTGTGGTCAAGACGGCCCCGTGTTCGTTATCATGATTGAGAATGATAAGATGTCCGTCCAAGAATTTCGTGCGAACTCAACAGTGATGGATCTGATGGAAAGAGCTGGGCGAGCAAGCTCAAGGTTGATGACATATAGGTTCCCTCTGAAGGAAGAACTGAGGCCAAGACTGAATCACATGCCTGTAAGTGATCCCAATTGCAAGTTGAAGATGGGGGATGTGGTGGAGCTTACACCAGCCATACCTGACAAGTCTTTGACAGAATATAGGGAAGAAATCCAGCGTATGTATGACCGCGGGCTAACCGTCTCCGGCGCTGGACCTACTGCTAGCAGCATGGTTGGCTCAAGAAGCTGA 2208 0.4851 MAVSTIALYASPPSSVCSTPHPCQINAHGSCDFDMGSRSSSSSTASTSQKPVMGGLSCLFSSPAPAAVKHAPLSGFSGGGEDHGGGRGDELNLKELGSSFSYSPSKFGGSSWKRDHHSPVSVFNGPVSCSSTVGSSSNLRSTASSVRIGGGSERVGTSGLFDGFVRNALGSCLDYDSASFKVGGLDEGDSSALADELTFNLEDTFMEGGFEPYAKKLLLGAQLRHKIFCEEFVIKAFCEAEKAHRGQVRASGDPYLQHCLETAVLLALIGANSTVVAAGLLHDTLDDAFLTYDYIFGTFGAGVADLVEGVSKLSHLSKLARENNTACKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPVAKQQRFAKETLEIFAPLANRLGISSWKEQLENLCFKHLNPDQHDELSSKLVDSYDEARITSAIEKLEQALKDEGISYHVVSGRHKSLYSIYCKMLKKKLTIDDIHDIYGLRLIVDKEEDCYKALTIVHQLWSEVPGKLKDYIRRPKFNGYQSLHTVVMGEGKVPLEVQIRTKDMHLQAEFGFAAHWRYKEDDCQHSSFVLQMVEWARWVVTWQCEAMSKDSTSVGYGDSIKPPCKFPSHVDDCPYCYKPDCGQDGPVFVIMIENDKMSVQEFRANSTVMDLMERAGRASSRLMTYRFPLKEELRPRLNHMPVSDPNCKLKMGDVVELTPAIPDKSLTEYREEIQRMYDRGLTVSGAGPTASSMVGSRS 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01241 735 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 1 734 - -
Aip09g01241 735 SUPERFAMILY HD-domain/PDEase-like 216 406 - -
Aip09g01241 735 SUPERFAMILY Nucleotidyltransferase 396 585 IPR043519 -
Aip09g01241 735 SMART RelA_SpoT_2 449 559 IPR007685 GO:0015969
Aip09g01241 735 Gene3D Hypothetical protein af1432 222 406 - -
Aip09g01241 735 PANTHER - 1 734 - -
Aip09g01241 735 CDD HDc 253 381 IPR003607 -
Aip09g01241 735 Pfam HD domain 240 390 - -
Aip09g01241 735 ProSiteProfiles HD domain profile. 255 359 IPR006674 -
Aip09g01241 735 SMART hd_13 251 368 IPR003607 -
Aip09g01241 735 CDD NT_Rel-Spo_like 429 547 IPR007685 GO:0015969
Aip09g01241 735 Gene3D Beta Polymerase, domain 2 410 539 IPR043519 -
Aip09g01241 735 Pfam Region found in RelA / SpoT proteins 449 558 IPR007685 GO:0015969
Aip09g01241 735 ProSiteProfiles S4 RNA-binding domain profile. 673 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01241 Aip-Chr9 19873669 19878784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01241 256 556 EF-hand Containing Proteins AT3G17470 30.211 4.76e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01241 K00951 - gmx:100787301 1199.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g01241 09 19873669 19878784 Aip09g01241 09 19873669 19878784 ECH