LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip09g01176	ATGGCTTACGCATCTCGTCTTCTCAATCATTCTCGAAAGTTGAGAAATGCTTCGAACTTGGTACACCATGACCCTGCCCTTTTGGTTCGTTGGTTTTCCAGCGATGCTCAAACCTCTATCAGCAGAAAAAGCGATTTGTGGAAAATGCGGTCCCAGGGTTATATAACTTCAACAAGAAACACTGTCTCTGGAACAGTCCCGAATTTCACTAAGAGAAACCTCTCTGTGGCTACCATGAAAATGGATTCCATTGGTGGATCCTTGTTTAATGGAGGGATTTCACGAGGTTCACACGTCCAGACAAGGAGAGGTTATGCATCAGCAGCAGATCTCCCTCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCAACAATGACAGAGGGTAACATTGCTAGATGGTTGAAGAAAGAAGGTGATAAAGTCTCACCAGGTGAAGTGCTCTGTGAAGTTGAAACTGATAAAGCTACTGTTGAAATGGAATGCATGGAGGAAGGTTATCTTGCAAAAATAATACGTGGGGATGGGGCAAAAGAAATTAAAGTTGGTGAGGTAATCGCTATAACTGTTGAAGAAGAGGGGGATATTGCGAAGTTTAAAGATTACCAACCTTCAGCATCAGAGCCTGCTACTGCTGCCCCTAAAGAAAAATCTGCTGCTCCTCCACCAAAGAAACAGGCGGTTGAGGAACCTACCCGAGAACCTGAGCCAAAGGTTTCCAAACCTACTGCACCACCACCTTCAGGAGATCGCATTTTTGCTAGTCCTCTGGCTAGAAAGTTGGCTGAAGAGAAAAATGTACCACTCTCAAGCATTAAAGGAACAGGACCAGAAGGGCTCATTGTCAAGGGTGACATTGATGATTACTTGGCTTCTGGGGCTAAAGAAGTTTCAGCACCATCAAGGGCAAAGGTTGCAACAGATGCAGCATTGGATTATACCGATGTTCCTATCTCTCAGATAAGGAAGATCACAGCTTCCCGTCTATTATTGTCAAAACAAACTATTCCTCATTACTATCTGACAGTAGATACATGTGTTGACAAACTCATGAGTTTGAGGACCAAACTCAATTCATTGCAAGAAGCCTCCGGTGGAGCCCGGATATCAGTTAATGACCTTGTCATCAAGGCTGCTGCTTTGGCTCTACGTAAAGTTCCTCAATGTAACAGTTCATGGACAGATGATTATATTCGCCAGTATCATAATGTGAACATTAATGTTGCAGTGCAGACTGATCATGGATTATTTGTTCCAGTCATCAGGGATGCAGACAAGAAAGGCCTCTCTGCAATTGGTGAAGAGGTCAAACAATTGGCAAAGAAAGCCAAAGAAAACAGCTTGAAACCCCAAGATTATGAGGGAGGAACATTTACAGTGTCTAACCTGGGAGGGCCATTTGGTGTCAAGCAGTTCTGTGCAATCATCAATCCTCCTCAAGCAGGCATTCTTGCAGTTGGATCTGCTGAGAAGAGAGTTGTACCGGGTTCAGGTCCTGAAGAGTTCAAGTTTGCTTCCTTCATGGCTGTGACTCTTAGCTGTGATCATCGCGTAATAGACGGTGCAATTGGTGCTGAATGGTTAAAAGCATTCAAGGGCTATATTGAAAATCCAGAGTCCATGTTGTTGTAA	1632	0.44	MAYASRLLNHSRKLRNASNLVHHDPALLVRWFSSDAQTSISRKSDLWKMRSQGYITSTRNTVSGTVPNFTKRNLSVATMKMDSIGGSLFNGGISRGSHVQTRRGYASAADLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIIRGDGAKEIKVGEVIAITVEEEGDIAKFKDYQPSASEPATAAPKEKSAAPPPKKQAVEEPTREPEPKVSKPTAPPPSGDRIFASPLARKLAEEKNVPLSSIKGTGPEGLIVKGDIDDYLASGAKEVSAPSRAKVATDAALDYTDVPISQIRKITASRLLLSKQTIPHYYLTVDTCVDKLMSLRTKLNSLQEASGGARISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNINVAVQTDHGLFVPVIRDADKKGLSAIGEEVKQLAKKAKENSLKPQDYEGGTFTVSNLGGPFGVKQFCAIINPPQAGILAVGSAEKRVVPGSGPEEFKFASFMAVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL	543

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip09g01176	543	SUPERFAMILY	Single hybrid motif	113	208	IPR011053	-
	Aip09g01176	543	Pfam	e3 binding domain	252	286	IPR004167	GO:0016746
	Aip09g01176	543	Gene3D	-	247	297	IPR036625	GO:0016746
	Aip09g01176	543	ProSiteProfiles	Biotinyl/lipoyl domain profile.	114	190	IPR000089	-
	Aip09g01176	543	MobiDBLite	consensus disorder prediction	199	253	-	-
	Aip09g01176	543	Pfam	2-oxoacid dehydrogenases acyltransferase (catalytic domain)	312	543	IPR001078	GO:0016746
	Aip09g01176	543	Pfam	Biotin-requiring enzyme	116	188	IPR000089	-
	Aip09g01176	543	PANTHER	DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX	57	543	-	-
	Aip09g01176	543	PANTHER	DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 3 OF PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL	57	543	-	-
	Aip09g01176	543	Gene3D	-	109	215	-	-
	Aip09g01176	543	ProSiteProfiles	Peripheral subunit-binding (PSBD) domain profile.	253	290	IPR004167	GO:0016746
	Aip09g01176	543	TIGRFAM	PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	116	543	IPR006257	GO:0004742\|GO:0006090\|GO:0045254
	Aip09g01176	543	CDD	lipoyl_domain	115	188	-	-
	Aip09g01176	543	SUPERFAMILY	CoA-dependent acyltransferases	312	543	-	-
	Aip09g01176	543	Gene3D	-	298	541	IPR023213	-
	Aip09g01176	543	ProSitePatterns	2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.	139	168	IPR003016	-
	Aip09g01176	543	SUPERFAMILY	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	246	291	IPR036625	GO:0016746

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip09g01176	Aip-Chr9	17708823	17718071	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip09g01176	1	543	Acyl Lipid Metabolism Gene Families	AT1G54220	68.116	0.0	761

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip09g01176	K00627		-	gmx:100778218	880.552