Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00848 ATGAAGCCTGCAGCCAAGAGAAGATCATCAACCTCCGAACCACACAACACCAACGGTGCTGCTCCTTCTGCTTCTCCTCCACTTCTTGCTGATTCTTTAACCGTTCCTGTTCCTGCTGCTGGAGAAGCTGCTAATGCTCTTGTTCATGGCGATTCTCGTGCTGATACTGTTGGCGCTGGTATCCAACCCGTTCCTCTCGCTGAGAACCAGAACATGGAGTTGCAGGTAGGGCAAGCAGAACAACAACAGCAGCGAAGAGAGGAGCTTCTTCGTGTTGAAGTTTCCGGACTGGAAGAAGAAGATGAAGAAATGGATGATGGTGATGATGATGCTGAAGAAGGTTCGTCTCGCCTTCCTGAGGGTTACTACGAAGTCGAAGCCATTCGTAAAAGGAGGGTCCGCAAGGGTGAGGTTCACTACTTGGTCAAATGGCTTGATTGGCCTGAGACAGCCAACACATGGGAGCCTCTGGAAAATCTGGAGGGTGTTTCTGAAATCGTCTCGGCTTTCGAGGAAAGCTGGCATTCAGCGCCGCAACGCAGGCGTAAGCGAAAGAATGTGGTTCAACATTCTGCGCTTAAGAAGAGGCTGGAGCGATCCGAGACTCCGTACAGCCTCAGACGATTTCCGGCTTCAACATCCACTAGCAACCATGCTCCATCAGCTCCTCCTCCTCAAATAACTGGCCTAAATTATGGTGACATCCCTGCCTTTCCACAGCCAGTGCTTTTCGCTGACGAAGTGGAAAACAACGGGGATGCTAGCATTGTCAGAAATGCTGCACCCCCAAATGGGAGTAGGCTCGGAAATGCTTCCGGATCAGTCGGTGCTGCAAATGAAGAGCCCGATTATGATCCTAAGCTTAGCGAGCTTAGAGCATCAACAGCCAATGGCTCTGATGCCGACAGGCTCGCCATACATTTCCAAGATCCTAATCCCTCGTTAGGGGATGGTCATGGAGAGGGGCAACCAAATGGTGGTTGCATGGAATCAAGCCAGGGTGGCGGCAGCAGAGGAGCCAGAAAGAGAAAATCTGGTTCTGTTAAGAGGTTTAACCGAGATTTACTCTCTGGTGAGCCTCTTAGTTTGCAGAATCCAGCTGGCACATCTGATGGCTCGGCTCAACAGGTGGTAGCCAGTAATAGGAAGGTGGATCCGCCCAGACCTTCCAACCCGATTGTAAAGATCCTAAAGCCAGTGAACTGTTTGCCGCCAATTCCAATCAGCACTCAGGATGTTGTGGTGAGCTTCTTGGCGATAAGGGCTGACGGCTCGGAGATATTGGTGGACAACCATTATCTCAAGAGGAATTATCCAATCATGCTGATCGATTTCTATGAGCAGCATCTCCGATACAGTCCTACGTCGTGA 1371 0.5062 MKPAAKRRSSTSEPHNTNGAAPSASPPLLADSLTVPVPAAGEAANALVHGDSRADTVGAGIQPVPLAENQNMELQVGQAEQQQQRREELLRVEVSGLEEEDEEMDDGDDDAEEGSSRLPEGYYEVEAIRKRRVRKGEVHYLVKWLDWPETANTWEPLENLEGVSEIVSAFEESWHSAPQRRRKRKNVVQHSALKKRLERSETPYSLRRFPASTSTSNHAPSAPPPQITGLNYGDIPAFPQPVLFADEVENNGDASIVRNAAPPNGSRLGNASGSVGAANEEPDYDPKLSELRASTANGSDADRLAIHFQDPNPSLGDGHGEGQPNGGCMESSQGGGSRGARKRKSGSVKRFNRDLLSGEPLSLQNPAGTSDGSAQQVVASNRKVDPPRPSNPIVKILKPVNCLPPIPISTQDVVVSFLAIRADGSEILVDNHYLKRNYPIMLIDFYEQHLRYSPTS 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00848 456 ProSitePatterns Chromo domain signature. 140 160 IPR023779 -
Aip09g00848 456 Pfam Chromo (CHRromatin Organisation MOdifier) domain 123 172 IPR023780 -
Aip09g00848 456 MobiDBLite consensus disorder prediction 93 117 - -
Aip09g00848 456 MobiDBLite consensus disorder prediction 199 233 - -
Aip09g00848 456 MobiDBLite consensus disorder prediction 1 33 - -
Aip09g00848 456 MobiDBLite consensus disorder prediction 206 224 - -
Aip09g00848 456 ProSiteProfiles Chromo and chromo shadow domain profile. 123 182 IPR000953 -
Aip09g00848 456 Coils Coil 69 100 - -
Aip09g00848 456 MobiDBLite consensus disorder prediction 306 390 - -
Aip09g00848 456 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 69 455 - -
Aip09g00848 456 MobiDBLite consensus disorder prediction 94 113 - -
Aip09g00848 456 SMART chromo_7 122 175 IPR000953 -
Aip09g00848 456 MobiDBLite consensus disorder prediction 358 380 - -
Aip09g00848 456 CDD CD_CSD 123 172 - -
Aip09g00848 456 SUPERFAMILY Chromo domain-like 117 181 IPR016197 -
Aip09g00848 456 SMART ChS_2 382 455 IPR008251 GO:0005634
Aip09g00848 456 Gene3D - 98 174 - -
Aip09g00848 456 MobiDBLite consensus disorder prediction 255 285 - -
Aip09g00848 456 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 69 455 IPR044251 GO:0006325|GO:0031507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00848 Aip-Chr9 11093122 11096326 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00848 - - ahf:112732281 790.03