Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00776 ATGGAAGCGCTTAAACTGTGGAACCTAACAAGCCAACCACTCAAGAGGCACTTACTTCACTCAACTACTTCAATCACCTCTTACGCATTTCGTCGAACACCTCGTACCCTCCTTCTCCGCTCCTCCTCTTCTTCTTCTTCTTCTTCAACCGCCTCTTCCTCCGCCCCCGACGTCGACAAACCCACCGGAGCTGCTTCCAGGACTGCTGGACGCAACCGCCGTGCCCCGGCGTCTCCGACCACTTCGACTTCCGATAGGGAGGCTGTTCGAGCCATTCGCTTGAGGAAGGTTGAAGAACTGAGAAGTAAAGGGCTTGATCCATATGCTTATGGATGGGAGAAAACTCACAGTGCTAATCAGCTGCAAGATATATATAGAGATCTGGGAAATGGTGAGGAAGCAAACGGTGAGAATGACCATGTATCAATTGCAGGAAGAATTGTTGCTAGAAGAGCATTCGGCAAGCTTGCTTTTTTGACACTAAGAGATGATTCTGGGACAATTCAGCTCTATTGTGATAAGGAGAGACTCATAGATGACCAGTTTGAACAGTTGAAAGCTCATGTTGATATTGGTGATATACTAGGTGCAAGAGGTTCAATAAAACGCACAGAGAAAGGAGAACTTTCTGTGTGTGTCCTTTCTTTTGCAATCCTTACCAAATCTCTGCTTCCACTACCTGACAAATATCATGGCTTAACTGATATAGATAAACGCTATCGCCAAAGATACGTAGATATGATTGCAAATCCAGAGGTAGCAGATGTTTTCCGCAAAAGAGCAAAGGTTGTATCAGAGATACGGAGAACAATGGATTCTTTAGGTTACATTGAAGTTGAAACCCCAGTTTTGCAGGGAGCAGCTGGGGGAGCCGAAGCCAGACCATTTATTACACATCATAATTCTCTTGGAAGGGACTTATATTTGAGAATTGCAACTGAATTACATCTGAAGAGAATGCTGGTTGGTGGATTTGAAAAGGTATATGAGATTGGGCGAATATTTAGAAATGAAGGAATTTCAACTCGTCATAATCCTGAATTTACAACAATAGAGATGTATGAAGCATACTCAGACTACCAAAGCATGATGAATTTGGCAGAGGAGATTGTCACTCAATGTGCCCTAGCAGTTCTTGGGAAACTTACCCTAGATTATCAGGGAGTTGAGATATGTCTGGAGAGACCTTGGAGGAGGGAGACCATGCACAACCTTGTTAAAGAAGTTTCCGGCATTGATTTTAGTGAATTGGGATATGATCTTGAAGTTGCAAAGAAAGTTACTCTTAGTACCCTTGGAAACAATCTTGATGCCAAGGACAAAGCTTCGATTGAAGCTTGCCAATCTGTTGGCCATCTACTTAATGAGGTCTTTGAGGTTGTTGTAGAACCAAAGCTCATCCAACCTATATTTGTTTTAGACTATCCAATTGAAATATCTCCACTGGCCAAACCACACCGAAGATCCATAGGTTTGACTGAGAGATTTGAACTATTCATTTGTGGCCGTGAGATAGGCAATGCATTCTCGGAACTGACTGATCCTATAGATCAGAGAGGTCGCTTAGAGGATCAAGTTAGACAACATGAAAAGAAGAGAGCTGAGGCTGCTTCAAGAAATGCCGATAAGAAGGAAGGGACGGAAAACGAGGATGACTTATATGAAGTTACTCTTGATGACGACTTTCTAACAGCTTTGGAGTATGGAATGCCTCCAGCCTCTGGAATGGGACTTGGAATTGACAGGATCGTGATGCTTTTGACAAATTCTCCCAGCATTCGAGATGTAATAGCCTTTCCAGTATTGAAAGTCCAGCAATAG 1821 0.4322 MEALKLWNLTSQPLKRHLLHSTTSITSYAFRRTPRTLLLRSSSSSSSSSTASSSAPDVDKPTGAASRTAGRNRRAPASPTTSTSDREAVRAIRLRKVEELRSKGLDPYAYGWEKTHSANQLQDIYRDLGNGEEANGENDHVSIAGRIVARRAFGKLAFLTLRDDSGTIQLYCDKERLIDDQFEQLKAHVDIGDILGARGSIKRTEKGELSVCVLSFAILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADVFRKRAKVVSEIRRTMDSLGYIEVETPVLQGAAGGAEARPFITHHNSLGRDLYLRIATELHLKRMLVGGFEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMNLAEEIVTQCALAVLGKLTLDYQGVEICLERPWRRETMHNLVKEVSGIDFSELGYDLEVAKKVTLSTLGNNLDAKDKASIEACQSVGHLLNEVFEVVVEPKLIQPIFVLDYPIEISPLAKPHRRSIGLTERFELFICGREIGNAFSELTDPIDQRGRLEDQVRQHEKKRAEAASRNADKKEGTENEDDLYEVTLDDDFLTALEYGMPPASGMGLGIDRIVMLLTNSPSIRDVIAFPVLKVQQ 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00776 606 CDD LysRS_core 250 603 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Aip09g00776 606 Hamap Lysine--tRNA ligase [lysS]. 92 605 IPR002313 GO:0004824|GO:0005524|GO:0006430
Aip09g00776 606 Pfam tRNA synthetases class II (D, K and N) 237 602 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Aip09g00776 606 Gene3D Bira Bifunctional Protein; Domain 2 231 606 IPR045864 -
Aip09g00776 606 CDD LysRS_N 140 247 IPR044136 GO:0000166
Aip09g00776 606 SUPERFAMILY Nucleic acid-binding proteins 87 228 IPR012340 -
Aip09g00776 606 SUPERFAMILY Class II aaRS and biotin synthetases 235 602 IPR045864 -
Aip09g00776 606 PRINTS Lysyl-tRNA synthetase signature 272 282 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Aip09g00776 606 PRINTS Lysyl-tRNA synthetase signature 288 304 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Aip09g00776 606 PRINTS Lysyl-tRNA synthetase signature 317 330 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Aip09g00776 606 PRINTS Lysyl-tRNA synthetase signature 335 352 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Aip09g00776 606 PRINTS Lysyl-tRNA synthetase signature 468 484 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Aip09g00776 606 MobiDBLite consensus disorder prediction 73 87 - -
Aip09g00776 606 TIGRFAM lysS_bact: lysine--tRNA ligase 91 604 IPR002313 GO:0004824|GO:0005524|GO:0006430
Aip09g00776 606 PANTHER LYSYL-TRNA SYNTHETASE 72 606 - -
Aip09g00776 606 MobiDBLite consensus disorder prediction 41 59 - -
Aip09g00776 606 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 257 600 IPR006195 -
Aip09g00776 606 Pfam OB-fold nucleic acid binding domain 141 215 IPR004365 GO:0003676
Aip09g00776 606 MobiDBLite consensus disorder prediction 520 551 - -
Aip09g00776 606 PANTHER LYSINE--TRNA LIGASE 72 606 - -
Aip09g00776 606 MobiDBLite consensus disorder prediction 41 89 - -
Aip09g00776 606 Coils Coil 519 539 - -
Aip09g00776 606 Gene3D - 80 230 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00776 Aip-Chr9 9825330 9833235 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00776 K04567 - gmx:100787720 994.956