Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00624 ATGGAATACCCAGACACCGCAATTTCTCTGAGATCGAGCTTAACGTTCGGTGAAACACTCTGTGCGGTGTGCATTCCGCTTATCGGAATCGTTGAAGCTCTGTTTGTCAGCTTAGCTGGTTGCTTCGATTTCCATGGCAACAAGCAAAGCAAGAAAAACCAGATCCCTAGCTCTTTTGATGACATCCTTCGCCTCGCCAAGGATTCTCCATTTACGGTTAATGAAATTGAGGCGCTGCGTGAGTTGTTCAAGAAGTTGAGTAGCTCAATTATTGATGATGGACTTATTCACAAGGAAGAGCTGCAATTGGCACTATTGAAGACCCCAGTTGGCGAGAATCTTTTCCTTGATAGGGTGTTTGATCTCTTCGATGAAAAAAGAAATGGTGTTATAGAATTTGAGGAATTTGTGCATGCTCTCAGTATCTTTCATCCATATGCTTCTTTAGAAAAGAAAATTGATTTTGCTTTTAGATTGTATGACCTGAGACAAACTGGATATATCGAGCGGGAAGAAGTTAGGCAAATGGTGGTTGCGATAATGTCTGAATGTGACATGCATTTGGAAGATGAAGTTCTTGAAAGCATTATTGATAAGACATTTCAAGATGCTGATACTGACAATGATGGTAAAATAAGCAAAGAAGAATGGAGGGAATATGTTCTTCGGCACCCGTCCCTATTGAAGCACATGACTCTTCCTTACCTCAAAGACGTAACCACGGTATTTACCAGCTTCATTTTCAACACGGAAGTTGATGATTCCCACTGGCAGAGAGGTATCATAAGCTATAAAAATTAA 801 0.407 MEYPDTAISLRSSLTFGETLCAVCIPLIGIVEALFVSLAGCFDFHGNKQSKKNQIPSSFDDILRLAKDSPFTVNEIEALRELFKKLSSSIIDDGLIHKEELQLALLKTPVGENLFLDRVFDLFDEKRNGVIEFEEFVHALSIFHPYASLEKKIDFAFRLYDLRQTGYIEREEVRQMVVAIMSECDMHLEDEVLESIIDKTFQDADTDNDGKISKEEWREYVLRHPSLLKHMTLPYLKDVTTVFTSFIFNTEVDDSHWQRGIISYKN 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00624 266 CDD EFh 152 219 IPR002048 GO:0005509
Aip09g00624 266 ProSiteProfiles EF-hand calcium-binding domain profile. 192 227 IPR002048 GO:0005509
Aip09g00624 266 ProSiteProfiles EF-hand calcium-binding domain profile. 111 146 IPR002048 GO:0005509
Aip09g00624 266 SMART efh_1 115 143 IPR002048 GO:0005509
Aip09g00624 266 SMART efh_1 196 224 IPR002048 GO:0005509
Aip09g00624 266 SMART efh_1 152 180 IPR002048 GO:0005509
Aip09g00624 266 Gene3D - 63 255 - -
Aip09g00624 266 ProSitePatterns EF-hand calcium-binding domain. 205 217 IPR018247 -
Aip09g00624 266 SUPERFAMILY EF-hand 65 245 IPR011992 -
Aip09g00624 266 Pfam EF-hand domain pair 151 220 IPR002048 GO:0005509
Aip09g00624 266 PRINTS Recoverin family signature 119 140 - -
Aip09g00624 266 PRINTS Recoverin family signature 166 184 - -
Aip09g00624 266 PRINTS Recoverin family signature 212 232 - -
Aip09g00624 266 CDD EFh 116 177 IPR002048 GO:0005509
Aip09g00624 266 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 5 254 - -
Aip09g00624 266 Pfam EF-hand domain pair 93 137 IPR002048 GO:0005509
Aip09g00624 266 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Aip09g00624 266 PANTHER CALCINEURIN B 5 254 IPR045198 GO:0005509|GO:0019722|GO:0019900
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00624 Aip-Chr9 7344734 7348547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00624 31 255 EF-hand Containing Proteins AT5G55990 60.000 3.06e-92 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00624 K06268 - gmx:100801943 412.535