Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00615 ATGGCTCACCAACCTTTTGACCCATACTACGCATACCAGCAGCAGGATGAGCGAAGCCACATCAACACGTTGTTTGTGTCGGGCCTCCCAGACGACGTGAAGGCGCGTGAGATTCACAACCTCTTCCGCCGTCGCCCCGGCTTCGACTCCTGCCAGCTCAAGTACACCGGACGCGCCAACCAGGTTGTTGCGTTTGCTACTTTTTTCAATCATCAATCGGCGATGGCAGCATTGCACGCTTTAAATGGCGTGAAATTTGATCCACAAGCTGGTTCTGTTTTGCATATTGAACTTGCTAGGTCAAACTCAAGGAGGAAGCGTAAGCCAGGTAGCGGAGCCTATGTTGTTATAGATAAACGGTCTAAAGGAGAGGCTGATGTTCAAGGGTCATCAAGTGATGATGGTGACAGTGATCCTGATGAACCATCAGGAAGTGGTGGCAGCCATGGTGATTTAGCAACCACTAAAAGGTCGAAAGTACAGTTTACTACGAGTCACTATTTCGAGCAGCATGAAAGGGGTCCTGATGGAGGACCATGCTCTACTCTCTTCATTGCAAATCTTGGTCCAAACTGCACCGAAGATGAACTGAGACAAACTTTCTCAGTGTATGCTGGATTCAACATGGTCAAAATCCGTTCTAGAGGATCAATCCCCTTTGAACAAGCTACTAAGGTCATGGAGCAGCTTCAGGGCAGCATGCTGTCGTCGTCAGATCGGGGTGGCATGCACATAGAATACGCAAGGTCTAAAATGAGGAAGCATTAG 768 0.487 MAHQPFDPYYAYQQQDERSHINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHALNGVKFDPQAGSVLHIELARSNSRRKRKPGSGAYVVIDKRSKGEADVQGSSSDDGDSDPDEPSGSGGSHGDLATTKRSKVQFTTSHYFEQHERGPDGGPCSTLFIANLGPNCTEDELRQTFSVYAGFNMVKIRSRGSIPFEQATKVMEQLQGSMLSSSDRGGMHIEYARSKMRKH 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00615 255 PANTHER RNA-BINDING PROTEIN-RELATED 8 244 - -
Aip09g00615 255 MobiDBLite consensus disorder prediction 102 156 - -
Aip09g00615 255 Gene3D - 17 104 IPR012677 -
Aip09g00615 255 SMART rrm1_1 23 97 IPR000504 GO:0003723
Aip09g00615 255 SMART rrm1_1 182 246 IPR000504 GO:0003723
Aip09g00615 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 250 IPR000504 GO:0003723
Aip09g00615 255 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 8 244 - -
Aip09g00615 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 87 IPR000504 GO:0003723
Aip09g00615 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 215 IPR000504 GO:0003723
Aip09g00615 255 Gene3D - 176 255 IPR012677 -
Aip09g00615 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 101 IPR000504 GO:0003723
Aip09g00615 255 SUPERFAMILY RNA-binding domain, RBD 22 215 IPR035979 GO:0003676
Aip09g00615 255 CDD RRM_RBPMS_like 22 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00615 Aip-Chr9 7199792 7202824 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00615 - - gmx:100810989 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00615 09 7199792 7202824 Aip09g00615 09 7199792 7202824 ECH