Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00556 TGAAAATGCTGATGCTGTGAAGGCTCTTTTTGGCATAGAACTTATTAGCAGGATTCATTGCCAAGAGAGTAACGAAGAAAGCTCAGAAACAGAATCTGTTTATTCACTTAAATGCCACATATCTCAGGAGGTGAACCATTTGCATGAAGGAATAAAACAAGGATTAAAATCAGAATTGGAGAAAGCTTCCCCTGCTTTGGGCCGTAGTGCTAACTACTTGAAGGAATCACGCATCAATGCCTTGCCAAGGTATTTGACAGTTCAGTTTGTCCGTTTTTTCTGGAAGAGAGAGTCCAACCAAAAGGCCAAGATTTTGCGGAAAGTGGATTATCCTTTGGAGTTGGATGTTTATGACTTTTGTTCTGATGATCTTCGCAAAAAGTTGGAAGCCCCAAGAAAGCTCCTAAGAGATGAGGAAGGAAAAAAGCTTGGTCTGAAAGGCAGTGAGAAAAGCTCAGTTCAAAAGGATAACGATGAAAAAATGGCAGATGCAGAGGGATCTTCAAATGGAGGAGGCGAGCCATCTGTAGCTCCAATGGAAGAGGGTGAAAAAGCTACGCAGATGACTGGAATATATGATTTGGTTGCCGTATTGACCCACAAGGGTAGAAGTGCTGATTCGGGGCATTATGTTGGTTGGGTCAAGCAAGAAAATGGGAAGTGGATAGAGTTTGATGATGACAACCCCAAACCCAGAATAGAAGACGACATCACTAGACTATCTGGAGGAGGTGATTGGCACATGGCTTACATAATCATGTACAAGGCTCGTGTTGTTTTTCACACTTTACCAAATTCTCAATGCACATCAACGATCTCAGTCTCAGCAATTCTTCAACACACTGGGGAGCTCAGAGATTTTATTAAGGAAATGGACAAAATTTCTGATCTGCCAAAGATAATCCTGCATGACATTCTTTCAAGGTTGCCTTACGAAGATGCTGCAAGGACCAGTGTTTTGTCCAAGGCTTGGCATGAAACATGGTCCTCATTCCCCATCTTGGTCTTCCACGGCTCTCGATGCGTGCGCGTGCACGTGAAGGATAGAAAAGATCCCCTGAAGATACAAGAAAACAGGAGGAAAGTGAACAGCTTCCTCAAATCTGTGGACAGGACACTTGTTAGGTTCCACCACCACGGCTTTGCCATCAAAGAATTTAACCTGAGTATGATGTTCTTCCATCCTCGGTTCATGCCACATCTCGTCGACCGGTGGATGAAGATAGTAGGTGAAAGTAGCAGTATTCAGGTGCTAAAGCTTGAACTTGAACTTGCTGACTGTTACTTTGGATGTGAGTTTGACTCACACGCCGTTGATAATTATTACTACTTGCCACCAGATATACTGAAAGCCAAGTCATTAACTGAATTAGTGTTGTCAGGGAAGATTAGAGCAGACAAATTGATTGTAAATCACAGAATTAGGTTCCCTATGTTGCGGATATTGTCCTTAGTTGATGTTTATTTGGGACATGAACAAGCTCTTGAAGATCTCATTTCTGGTTGTCCTATGATTGAGGAATTAATATTGGAGCACTGTGTTGGATTGGAAAATGTAAAAGTACATGATTTGCCTAAGCTAAAGTCTGCTAAGTTATCTGGATTTCGTGAAATTCATGTTAATGTGCCGAGTCTAGAGTGTCTTCATCTTGGTAATGACCAATTAGAGTTCCCTTGTGATATCAGTATAGACAAGTGCAGAAATTTGAAGGTGTTTATTTTAGAGGCTGTGAGTTCTGTTTTTGTCTCTAACCAATGGTTGCGTGAACTTTTTGACAAGTTTCCTTTCCTTGAGACGTTGGAATTAAGTGGTTGTGTTACATCTGAGAGCCTAATGATCTCCAGTTCTAGGCTCAAGGTTTTGTCCTTCCAGGCTTGCTTTGAGTTGAAGGAAGCTAAGATCGATGCACCGAATTTAGAGTCATGTAGATATTCTGGACAATCCAGCCACATGCCAGCAGCTATATCTTTTGTGAATTGTTCAAATCAGGTGGATTTTGATGTTGTCTTCCCAATAGAATTTCGTATGGATTTGAAAAGGCTTAGGGCATTTCTCCAAAACATAGCACCAAGAAATGTTATGGTATCCTTGTATCTTGGAATCATGAAAGGTTCATCTATTGTGTTCAATGAAGATGTACTACAAAATGTTCAAGTCCCTTTGCCAAGGATCAAAGAATTGAGGTTATCGGTAGCTGAAAAAACTGAAGAGTTCTGTGTGCTTCTTATCAATGATTTGTTTTGGAGCTTCCGTCCTGCTATTATTTCTTTGAACCTGAAACTCTGCAGCAGAATATTCCTTAAGGTTTGTCATTGA 2317 0.4096 ENADAVKALFGIELISRIHCQESNEESSETESVYSLKCHISQEVNHLHEGIKQGLKSELEKASPALGRSANYLKESRINALPRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDDLRKKLEAPRKLLRDEEGKKLGLKGSEKSSVQKDNDEKMADAEGSSNGGGEPSVAPMEEGEKATQMTGIYDLVAVLTHKGRSADSGHYVGWVKQENGKWIEFDDDNPKPRIEDDITRLSGGGDWHMAYIIMYKARVVFHTLPNSQCTSTISVSAILQHTGELRDFIKEMDKISDLPKIILHDILSRLPYEDAARTSVLSKAWHETWSSFPILVFHGSRCVRVHVKDRKDPLKIQENRRKVNSFLKSVDRTLVRFHHHGFAIKEFNLSMMFFHPRFMPHLVDRWMKIVGESSSIQVLKLELELADCYFGCEFDSHAVDNYYYLPPDILKAKSLTELVLSGKIRADKLIVNHRIRFPMLRILSLVDVYLGHEQALEDLISGCPMIEELILEHCVGLENVKVHDLPKLKSAKLSGFREIHVNVPSLECLHLGNDQLEFPCDISIDKCRNLKVFILEAVSSVFVSNQWLRELFDKFPFLETLELSGCVTSESLMISSSRLKVLSFQACFELKEAKIDAPNLESCRYSGQSSHMPAAISFVNCSNQVDFDVVFPIEFRMDLKRLRAFLQNIAPRNVMVSLYLGIMKGSSIVFNEDVLQNVQVPLPRIKELRLSVAEKTEEFCVLLINDLFWSFRPAIISLNLKLCSRIFLKVCH 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00556 771 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 192 210 IPR018200 GO:0004843|GO:0006511
Aip09g00556 771 MobiDBLite consensus disorder prediction 145 181 - -
Aip09g00556 771 Pfam Ubiquitin carboxyl-terminal hydrolase 2 254 IPR001394 GO:0004843|GO:0016579
Aip09g00556 771 SUPERFAMILY F-box domain 291 336 IPR036047 GO:0005515
Aip09g00556 771 SMART fbox_2 297 337 IPR001810 GO:0005515
Aip09g00556 771 Gene3D Cysteine proteinases 1 261 - -
Aip09g00556 771 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 257 IPR028889 -
Aip09g00556 771 Pfam F-box domain 294 330 IPR001810 GO:0005515
Aip09g00556 771 Gene3D Ribonuclease Inhibitor 421 770 IPR032675 -
Aip09g00556 771 SUPERFAMILY Cysteine proteinases 5 255 IPR038765 -
Aip09g00556 771 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 259 - -
Aip09g00556 771 SUPERFAMILY RNI-like 422 626 - -
Aip09g00556 771 MobiDBLite consensus disorder prediction 145 163 - -
Aip09g00556 771 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 259 IPR044635 GO:0004843|GO:0016579|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00556 Aip-Chr9 6120617 6149833 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00556 292 510 EF-hand Containing Proteins AT5G41840 27.602 4.69e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00556 K11843 - ahf:112776320 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00556 09 6120617 6149833 Aip09g00556 09 6120617 6149833 ECH