Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00487 ATGGCCACTCCCATTGGAAAAGGGAATTGTTCATTGAACCTTTTCCTACGAAATTGGAGAAACTTTTGCTTCCATTTCCATCGATTCTCAACTTCTTCCATCGAGTCTTCTTCTCCCTTACCCTTCAAATCCATCACTTCCACTATTAGGACCAAGCCAAGTAAGAGGATTCCCAATAACAGTTCCTTCTTCATACCCATTCCTCATCAAACCATTCCTCAAGCCAAAGGCCAAGACCTTGATTTCATTAACGTTTCCCACAGCCACATCATTCACTCTCAGTGGGAAAATCTCCAACCTTTCTCACATCCCCTCACACCCTTCAGGGTCAAACACATCCTCCTCAAGCTAAAAAATGACGCCGTTCTCTCCCTCAAATTTTCCAACTGGGTTCAAAACCAAAACCCTAGTTGCCACTCCCTCGAAACACACGCCATCTTACTCCATACTCTTGCCAAAAACCGAAACTTTAGAGCCATTCAAACGCTCCTCAAGAGGATCATCGCTGATTCAGGCGCTTTGGATTTGGATTTGCCTTCTAAGCTCTTTGAATCATTGTTGTGTTCTTACCGTTTGTGTGATTCCACCCCTCTTGTTTTTGATGCGCTTTTCAAGACTTTTGCGCATTTGAATAAAATTAGGAATGCCACTAACACGTTTTGCCGCATGAAGGAGTATGGGTTCTTCCCCACTGTTGAGTCCTGCAATGCTTTCATGAGTTCTCTGATTCATTTGCAGAGGCCTGAGTTAGGGGAGTTGCAGAAGGGTTTTGAGGTGTTGGAGAAGATGAGGGACATGGGTTTGAGTCCAAATGTTGTGTCGTTTAATGCATTGATTTCAGGGTATTGTAATAAGGGAATGGTTAGTTTGGCATTGAAGGTTAAGTCCTTGATGGAGCATAATGGGGTGCAACCAAATGTGGTTACTTTTAACACCATCATCAATGGGTTCTGCAAGGAGAGGAAGTTGCATGAGGCTAATAAGGTTTTCAATGAGATGAAGGGTTGCAATGTGGCTTCTAATATTGTGACATACAATACTTTGATCAATGGGTATAGTTCAGTTGGGAACAGCGAAATGGGGACAAGGCTTTATGAGGAGATGAGGAGGGATGGGATTAAGGCTGATATACTGACTTATAATGCATTGATTTTGGGATTGTGTAAGGAGGGGAAAACGAAAAAGGCTGCGTATCTGGTTAAGGAACTTGACAAGGAGAACTTGGTCCCGAATGCGTCAACCTTTTCAGCACTGATCACCGGGCAGTGTGCGAGAAAGAACTCTGAGCGTGCCTTTCTTATTTATAGGAGCATGATAAGGAGTGGTCTTGAGGGACATGTTGGGCAGGTCGATGGCTCCTGA 1362 0.4383 MATPIGKGNCSLNLFLRNWRNFCFHFHRFSTSSIESSSPLPFKSITSTIRTKPSKRIPNNSSFFIPIPHQTIPQAKGQDLDFINVSHSHIIHSQWENLQPFSHPLTPFRVKHILLKLKNDAVLSLKFSNWVQNQNPSCHSLETHAILLHTLAKNRNFRAIQTLLKRIIADSGALDLDLPSKLFESLLCSYRLCDSTPLVFDALFKTFAHLNKIRNATNTFCRMKEYGFFPTVESCNAFMSSLIHLQRPELGELQKGFEVLEKMRDMGLSPNVVSFNALISGYCNKGMVSLALKVKSLMEHNGVQPNVVTFNTIINGFCKERKLHEANKVFNEMKGCNVASNIVTYNTLINGYSSVGNSEMGTRLYEEMRRDGIKADILTYNALILGLCKEGKTKKAAYLVKELDKENLVPNASTFSALITGQCARKNSERAFLIYRSMIRSGLEGHVGQVDGS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00487 453 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Aip09g00487 453 TIGRFAM PPR: pentatricopeptide repeat domain 379 412 IPR002885 -
Aip09g00487 453 TIGRFAM PPR: pentatricopeptide repeat domain 343 376 IPR002885 -
Aip09g00487 453 TIGRFAM PPR: pentatricopeptide repeat domain 273 307 IPR002885 -
Aip09g00487 453 TIGRFAM PPR: pentatricopeptide repeat domain 414 444 IPR002885 -
Aip09g00487 453 TIGRFAM PPR: pentatricopeptide repeat domain 308 338 IPR002885 -
Aip09g00487 453 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Aip09g00487 453 Gene3D Tetratricopeptide repeat domain 110 244 IPR011990 GO:0005515
Aip09g00487 453 Gene3D Tetratricopeptide repeat domain 367 447 IPR011990 GO:0005515
Aip09g00487 453 Pfam PPR repeat 301 334 IPR002885 -
Aip09g00487 453 Pfam PPR repeat 266 299 IPR002885 -
Aip09g00487 453 PANTHER ATPASE EXPRESSION PROTEIN 3 250 444 - -
Aip09g00487 453 PANTHER ATPASE EXPRESSION PROTEIN 3 44 249 - -
Aip09g00487 453 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Aip09g00487 453 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Aip09g00487 453 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 250 444 - -
Aip09g00487 453 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 44 249 - -
Aip09g00487 453 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Aip09g00487 453 Gene3D Tetratricopeptide repeat domain 246 366 IPR011990 GO:0005515
Aip09g00487 453 Pfam PPR repeat 413 443 IPR002885 -
Aip09g00487 453 Pfam PPR repeat family 341 389 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00487 199 444 Glycosyltransferase AT1G05670 27.642 1.08e-31 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00487 - - adu:107464028 865.144