Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00471 ATGGGAAATTGCGATGAAGTGGGAGCATCGTCGAAGCAATACGGTGTGACGAAGCCAATTTCAAAGGCTGGCCCAACGGTTGCTGATATCCAAAGGACTAAGGAATTAGAGAAGTTTCTGGTTGATTCTGGGCTTTACGAGAGCGAGGAGGAAGCTGCCAAGAGAGTAGAGGTTCTTCACCGACTTGGACAGGTGTTAAAAAGTTGGGTGAAGATGCTTACCCGCAGAAGAGGATACACTGATCAAATGGTTGAGGATGCAAATGCCGTTATATTCACTTTTGGTTCTTATCGACTTGGTGTTCATGGTCCTGGGGCTGACTTGGATACTTTATGTATTGGGCCATCTTATGTTAATCGAGAGGAGGATTTTTTCTTTGCATTGCATGACATCCTTGCTAACATGGAGGAAATAACAGAACTGCAACCAATTCCAGATGCTCATGTCCCAGTAATGAAATTCAAGTTTGATGGAATATCGATTGATCTACTTTATGCAAGTATTTCTTGTTTAGTTGTGCGTGATGACTTGGACATAGCAGACGTTTCTATTCTACAAAACATTGATGAGCCAACAGTACGAAGTTTAAATGGCTGCAGGGTTGCGGATCAAATTCTTAAGCTTGTTCCAAATGTTGAGAATTTTCGAACAACACTTCGTTGCCTAAAGTTTTGGGCGAAAAGGAGAGGTGTCTATTCCAATGTTACTGGTTTTCTTGGCGGTGTTAACTTGGCCCTTCTTGTGGCTCGAGTGTGCCAATTATATCCAAATGCAATTCCAAGCATGCTTGTCTCTCGATTCTTTAGGGTGTATACACAGTGGCGGTGGCCAAATCCTGTCATGTTATGTCCTATAGAGGAGAATGAGCTGGGGTTTTCTGTTTGGGATCCTCGTAAAAATCCTCGTGATCGAACCCATCATATGCCAATCATTACTCCTGCTTATCCTTGTATGAATTCTAGTTATAATGTTTCTACAAGCACCCTTCGTGTTATGATGGAGCAGTTTCAATATAGCAACAAGATATGTGGGGAAGTTGAATTGAATAAGGCTCAATGGACTGCTCTATTTGAGCCCTATGCTTTCTTTGAAAGCTATAAAAACTACTTGCAAGTAGACATAGTTGCTGCTGATGTTGATGACTTGCGTGCTTGGAAAGGTTGGGTGGAATCACGCCTTCGACAACTAACTTTAATGATTGAGCGTGATACTTTTGGGAAGTTGCAATGTCATCCCTATCCTTATGAGTATATGGATATGTCAAGGCAGTGTGCACATTCTGCTTTCTACATGGGATTGCAACGGAAGTCAGGGGAGATTGTTCAAGAAGGTCAGCAATTTGATATACGTGGGACTGTTGATGAGTTTCGACATTCAGTTAATATGTACATGTTCTGGAAGCCGGGGATGGACATTTATGTTTCTCATGTTCGTAGAAGGCAAATCCCATCCTACGTGTTTCCTGAGGGTTATAAACGATCTCGACAGTCAAGGCCAACTGGCCAACTGGACAATCCTCATAAATCATCTCATGAGGATATCTCTGGAACTGAACATTGTGAAAGAAACCCAAAAAGGAAGTATGTTGATAAGGTGGGTGTGAAACAGGATATTGCAGTGAAAAAACAATTTAGTGTTCCGATGGATAGCTTCGCTAGAAGCAGGTTGAGCATGGGTTTTAGTGGTTTAACTGCTGAGATGCACAATAGTGGCCATGATATGATTGAGAGGACAAAGTCTCCTGAATCTGACACTGAGTGTGCCTCAAATTCTAGTGTGGTTACCTCTCTTACAAGTGATGGTGGTTCCTGTGAAGATGTTGGGTCTACACAAATAGCAGTTTCAGTTGAAGATCACAAGGGTGTTGACGGGACGATCAGTGGCAGGTTTCATGATACGGTGTGTGGGATACATTCTGTCTCACTAGTGGAAAATGAAGTGCCTAGAGGAAATGAAGTATTACAAAACGAGCTACAACAACAGTTGGAGGTTTTGGCTTTCAATTCCTTATATAGCTTTATCCATTTCTCATTAGTCCAATCATTTGATCAGCTCTTAGTTTTTTGA 2067 0.419 MGNCDEVGASSKQYGVTKPISKAGPTVADIQRTKELEKFLVDSGLYESEEEAAKRVEVLHRLGQVLKSWVKMLTRRRGYTDQMVEDANAVIFTFGSYRLGVHGPGADLDTLCIGPSYVNREEDFFFALHDILANMEEITELQPIPDAHVPVMKFKFDGISIDLLYASISCLVVRDDLDIADVSILQNIDEPTVRSLNGCRVADQILKLVPNVENFRTTLRCLKFWAKRRGVYSNVTGFLGGVNLALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSVWDPRKNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQYSNKICGEVELNKAQWTALFEPYAFFESYKNYLQVDIVAADVDDLRAWKGWVESRLRQLTLMIERDTFGKLQCHPYPYEYMDMSRQCAHSAFYMGLQRKSGEIVQEGQQFDIRGTVDEFRHSVNMYMFWKPGMDIYVSHVRRRQIPSYVFPEGYKRSRQSRPTGQLDNPHKSSHEDISGTEHCERNPKRKYVDKVGVKQDIAVKKQFSVPMDSFARSRLSMGFSGLTAEMHNSGHDMIERTKSPESDTECASNSSVVTSLTSDGGSCEDVGSTQIAVSVEDHKGVDGTISGRFHDTVCGIHSVSLVENEVPRGNEVLQNELQQQLEVLAFNSLYSFIHFSLVQSFDQLLVF 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00471 688 CDD NT_PAP_TUTase 54 209 - -
Aip09g00471 688 Pfam Nucleotidyltransferase domain 88 161 IPR002934 GO:0016779
Aip09g00471 688 MobiDBLite consensus disorder prediction 490 526 - -
Aip09g00471 688 Gene3D Beta Polymerase, domain 2 47 203 IPR043519 -
Aip09g00471 688 Pfam Poly(A) polymerase central domain 15 359 IPR007012 GO:0004652|GO:0043631
Aip09g00471 688 MobiDBLite consensus disorder prediction 505 526 - -
Aip09g00471 688 Gene3D - 15 357 - -
Aip09g00471 688 SUPERFAMILY PAP/OAS1 substrate-binding domain 210 359 - -
Aip09g00471 688 PANTHER POLY A POLYMERASE 4 589 - -
Aip09g00471 688 PIRSF PolyA_polymerase 3 620 IPR014492 GO:0004652|GO:0005634|GO:0043631
Aip09g00471 688 Gene3D Poly(A) polymerase predicted RNA binding domain 361 477 - -
Aip09g00471 688 SUPERFAMILY Nucleotidyltransferase 12 208 IPR043519 -
Aip09g00471 688 Pfam Poly(A) polymerase predicted RNA binding domain 362 421 IPR007010 GO:0003723|GO:0043631
Aip09g00471 688 Pfam Poly(A) polymerase predicted RNA binding domain 423 495 IPR007010 GO:0003723|GO:0043631
Aip09g00471 688 PANTHER NUCLEAR POLY(A) POLYMERASE 4 4 589 - -
Aip09g00471 688 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 361 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00471 Aip-Chr9 4962734 4968060 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00471 K14376 - gmx:100783237 1008.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00471 09 4962734 4968060 Aip09g00471 09 4962734 4968060 ECH