Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00371 ATGGAAGATAAAGAAGAAGAAGAAGAAGTGAAGTTCTCAGCGTTCCCTTTCAAGCCATATTCGATTCAGATGGAATTCATGAAGGCTCTTTATCACTCTCTCAACCAAGGTGGCGTCTCCATGTTAGAAAGCCCTACTGGTACTGGGAAGACTATGAGTGTTATTTATGTTGATGACAAGGAGTTTCTACTTGAAGAGTATGAGAGTGAAGACGAAGGGGATTTAGGGAGTGTGATGTCGAAGAGGAAGGCTACTAAAAGCATGCTTAATTCTTCGAGTGAAGATGAGTCTGATGATGCTGAGGAGGAGGAGGATGAGAAGAAATTCAAGGTTTATTTCTGCAGCCGAACACATTCGCAGCTTTCGCAGTTCATAAAGGAGTTACAGAAGACAATCTTTGCTAATGAGATGACTGTTGTGAGTTTAGGGTCAAGGAAAAATCTTTGCATTAACAAAGATGTGCTTTCACTTGGAAACTCCACACGCATAAATGAGCGATGCTTGGAACTCCAGAAGAAAAAGAAAAATGAAGCTACAAGAGTGAAGAACATAAGAGTAGGTGCACACACACGCAGAACAAAGGCCTCTTCTGGTTGCCCAATGCTTAGAAAACATAAACTACAACATGAATTCAGGAATGAGGTATCTGAACGAGGAGCCTTGGATATTGAAGATCTTGCAAACCTTGGAAAAACATTGGGAACCTGTCCGTACTATGGCTCTAGAAGCATGGTTGTGAGAGCTGATCTTGTTGTTCTTCCATATCAATCTCTTTTGTCGAAATCATCTCGTGAAGCTCTTGGTCTGAATTTGAAATCCAATATTGTTATAATAGATGAGGCACATAATTTAGCTGATTCACTCATCAGCATGTATGACTCAAAAATTACTTTATCACAGCTGGAGAATGTGCATTGCCATGTAGAACGGTACTTTGTGAGATTCCGGAGTCTTTTGGGATCAGCGAACCGGAGATATATTCAAACTCTGATGGTTCTGACTCAAGCTTTCCTTCGAGTACTACTCAATGAGAAGAATGGAAATCTGATGGATTCTTACCATGACATAGAACAGACTTCTGAAGAAAGTAGAACATCTGATTTTACTATGGCCATCAATGATTTTATCTTTGAACTAAATATAGACAATATCAACTTGATCAAATTGTTAAAGTATATAAAGGAAAGTAATATCATGCACAAGGTTAATAGTTATGGAGAAAAGGTGGCTAATTCGGAGAACACATCAGCACGCAATGAAATTCGGGAACATGGGGAGGAGGGGGGATGTCTGTCTGCTTTCCAGGCATTAGCGGATATATTACAGTCACTGACAAACAATGATAGTGATGGAAGGATAATAATTTCGAGGTCTAGTTCATCATCAAGCTTTAGGAAACAAGGAGGATATATCAAGTTTGTTATGCTCAGTGGCGAGAAGATTTTCTCTGAGATTGTAGATCAAGCACATGCTGTTCTATTAGTAGGGGGGACTCTTCAACCTATAGAAGAGACAAGGGAGCGATTATTTCCGTGGTTACCACCGAATCAGTTGCATTTCTTTTCATGCGGCCACATTGTCCCTCCAGATAGCATTATGCCAATTGCGGTTTCTCGTGGTCCTTCTGGCCGCTCCTTTGATTTTAGCTACAGCTCTAGAAGCTCACTAGACATGATGCGAGAACTAGGCCTTTTGCTATGTAACTTGGTGACTGTGGTTCCTGAAGGAATCGTAGTCTTCTTCCCTTCTTTCGATTATGAAGGTAAAGTGTATGAACTCTGGGGATCTTCTGGCATCATTGAGAGGATTACTAGGAGGAAGCGTATCTTTAGAGAGCCTAGGAATAATATGGAAGTTGAATCTGTTCTAAAGGAATATAAAGATACCATTTGTGCATTATCAAGTGTGAGTACAGAAGCAAACCAAGCATCTCAAAGTGGTGCAGTGCTCCTTGCTGTTGTTGGTGGGAAGATATCTGAAGGGATCAACTTAAGTGATGGAATGGGTCGGTGTGTCGTCATGGTTGGACTGCCATATGCTAGTCCATCTGATATCGAGTTATTGGAAAGGATAAAGCACATAGAAGGTTTTCGAAATTCAAAGTCCATTGAAAATACCCCATTTGGTGCAAGTTGTGATGTATATAATGGAGATGCACAAGGTGGTTTTGACATCTTAAGAAGTTGCAGCCACAGAGGGAGAGAGTACTATGAGAATCTCTGCATGAAAGCTGTAAATCAATCAATAGGTAGAGCAATTCGTCATATTAATGACTATGCAGCAATTTTGCTTGTTGATACGAGATATGCATCTGATTCCTCCAAAAGGAGCTTATCCCACCCAGTCAACAAGCTACCACAGTGGATAAAAGATCGTCTTGTTTCTTCCACTAATAACTATGGTGAAGTGCACAGGTTGTTGCATCAGTTTTTCAAATTCAAAAAGAGAAGCTGA 2454 0.4042 MEDKEEEEEVKFSAFPFKPYSIQMEFMKALYHSLNQGGVSMLESPTGTGKTMSVIYVDDKEFLLEEYESEDEGDLGSVMSKRKATKSMLNSSSEDESDDAEEEEDEKKFKVYFCSRTHSQLSQFIKELQKTIFANEMTVVSLGSRKNLCINKDVLSLGNSTRINERCLELQKKKKNEATRVKNIRVGAHTRRTKASSGCPMLRKHKLQHEFRNEVSERGALDIEDLANLGKTLGTCPYYGSRSMVVRADLVVLPYQSLLSKSSREALGLNLKSNIVIIDEAHNLADSLISMYDSKITLSQLENVHCHVERYFVRFRSLLGSANRRYIQTLMVLTQAFLRVLLNEKNGNLMDSYHDIEQTSEESRTSDFTMAINDFIFELNIDNINLIKLLKYIKESNIMHKVNSYGEKVANSENTSARNEIREHGEEGGCLSAFQALADILQSLTNNDSDGRIIISRSSSSSSFRKQGGYIKFVMLSGEKIFSEIVDQAHAVLLVGGTLQPIEETRERLFPWLPPNQLHFFSCGHIVPPDSIMPIAVSRGPSGRSFDFSYSSRSSLDMMRELGLLLCNLVTVVPEGIVVFFPSFDYEGKVYELWGSSGIIERITRRKRIFREPRNNMEVESVLKEYKDTICALSSVSTEANQASQSGAVLLAVVGGKISEGINLSDGMGRCVVMVGLPYASPSDIELLERIKHIEGFRNSKSIENTPFGASCDVYNGDAQGGFDILRSCSHRGREYYENLCMKAVNQSIGRAIRHINDYAAILLVDTRYASDSSKRSLSHPVNKLPQWIKDRLVSSTNNYGEVHRLLHQFFKFKKRS 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00371 817 Pfam Helicase C-terminal domain 566 782 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Aip09g00371 817 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 12 803 IPR045028 -
Aip09g00371 817 Gene3D - 544 785 IPR027417 -
Aip09g00371 817 TIGRFAM rad3: DNA repair helicase (rad3) 14 800 IPR013020 GO:0003678
Aip09g00371 817 CDD SF2_C_XPD 530 769 - -
Aip09g00371 817 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 9 340 IPR014013 GO:0005524
Aip09g00371 817 Gene3D - 18 341 IPR027417 -
Aip09g00371 817 SMART Cxpdneu3 584 771 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Aip09g00371 817 MobiDBLite consensus disorder prediction 74 102 - -
Aip09g00371 817 SMART deadxpd 11 323 IPR006554 GO:0003678|GO:0016818
Aip09g00371 817 SMART ultradead3 15 359 IPR014001 -
Aip09g00371 817 Pfam DEAD_2 113 301 IPR010614 GO:0003677|GO:0003678|GO:0005524
Aip09g00371 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 322 IPR027417 -
Aip09g00371 817 PANTHER ATP-DEPENDENT DNA HELICASE DDX11-RELATED 12 803 IPR028331 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00371 Aip-Chr9 3658134 3662828 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00371 K11273 - gmx:106794132 1158.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00371 09 3658134 3662828 Aip09g00371 09 3658134 3662828 ECH