Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00312 ATGCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCTCAAAGATCTGAGAGAGTGAAGTCTGTGGATCTACATCCTACAGAGCCATGGATTTTGGCAAGTTTATACAGTGGCACTGTCTGCATATGGAACTACCAATCTCAGACCATGGCTAAGTCTTTTGAGGTAGCTGAATTACCAGTTAGGTCGGCCAAGTTTATTGCACGTAAACAGTGGGTTGTTGCCGGAGCAGATGATATGCATATTCGTGTATATAATTACAACACAATGGATAAGGTTAAAATATTTGAGGCACACACAGATTACATTAGGTGTGTGGCAGTACATCCTAACCTTCCTTATGTGCTTTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGACAAGGGCTGGGTTTGTACCCAGGTATTTGAGGGGCATTCTCATTATGTCATGCAAGTGACATTTAACCCTAAAGATACCAACACCTTCGCAAGTGCCTCTCTTGATCGCACCATAAAGATTTGGAATCTTGGCTCTCCAGACCCTAATTTTACATTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAACCTTACCTAATAACTGGATCTGATGATCACACTGCAAAGGTATGGGATTATCAGACTAAAAGTTGTGTCCAGACTTTGGAGGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAGCTCCCTATAATTATTACTGGTTCTGAGGATGGTACAGTACGAATATGGCATTCCACAACGTATAGACTTGAGAATACATTGAACTATGGTCTTGAAAGAGTTTGGGCTATTGGATACCTCAAGGGTTCACGTCGGGTTGTGATTGGATACGATGAAGGTACTATTATGGTCAAACTTGGTCGAGAAGAACCAGTGGCCAGCATGGATAACAGCGGGAAGATTATTTGGGCTAAGCATAATGAAATTCAGACTGTCAATATAAGAAGTGTAGGAGCAGACACACAGATTGCTGATGGGGAAAGGTTACCTTTGGCTGTTAAGGAGCTGGGGACATGTGATCTCTACCCACAAAGCTTGAAACACAATCCAAATGGTCGGTTTGTTGTTGTTTGTGGAGATGGTGAGTATATTATATACACTGCTTTGGCATGGAGAAATAGATCGTTTGGCTCGGCATTGGAATTCGTCTGGTCTTCGGATGGGGAGTATGCTGTGAGAGAAAGTACATCAAAAATTAAGATTTTCAGCAAGAATTTCCAGGAAAAGAAGAGTATCCGGCCAACATTTTCGGCTGAACGAATATTTGGTGGCACTGTACTGGTAATGTGCTCAAATGATTTCATTTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGGATTGATGTTAATGTGAAAAACCTCTATTGGGCTGATAGTGGTGATCTAGTGGTGATTGCAAGTGACACATCATTCTACATCTTGAAGTACAACCGTGATGTTGTTGCATCATATCTTGACAGTAAAACGGCCGTTGATGAGCAAGGTGTTGAAGATGCCTTTGAGCTCCTCCATGAAATGAATGAGCGTGTGAGAACAGGGATCTGGGTTGGGGATTGTTTTATCTACAACAATTCTTCTTGGAGGCTTAACTATTGTGTTGGTGGAGAGGTGACTACAATGTCTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAAGGTTTACTTGATAGACAAAGAGTTCAATGTAATGGGATACACGCTACTGTTGAGCTTGATTGAGTACAAGACTCTTGTGATGCGTGGTGACTTGGATAGGGCCAATGAAGTTCTACCATCCATTCCTAAAGAGCATCACAACAGTGTGGCTCGATTCCTGGAATCACGAGGCATGATAGAGGATGCTCTTGAAGTAGCTACTGACCCTGACTATAGGTTCGATCTAGCCATGCAGCTTGGGAGATTAGAGGTTGCAAAGAGCATTGCCACGGAAGTGCACAGTGAGTCTAAATGGAAGCAGTTGGGAGAATTAGCCATGTCTACTGGAAAGTTAGAAATGGCTGAGGAGTGTCTAAAGCATGCAATGGATTTGAGTGGATTATTGCTGCTATATTCTTCTTTAGGAGATGCTGAAGGAATTTCAAAACTTGCATCTCTTGCTAAAGAGCAAGGGAAGAACAATGTTGCATTCCTTTGCTTATTTACACTGGGTAAACTTGAAGATTGCCTTCAACTGTTGATAGAAAGCAACCGGATTCCTGAGGCTGCTTTAATGGCTCGATCTTATCTCCCAAGCAAGGTGTCAGAGATAGTGGCAATTTGGCGAAAAGATCTGAACAAGGTTAGTCCAAAAGCTGCGGAATCATTGGCTGATCCTGAAGAGTATCCTAATTTGTTTGACGATTGGCAAGTTGCACTTGCTGTTGAATCCAAAGCAGCAGAAACAAGGTCAGAGTGGGAAATATATACTTTCCTGCAGCTTTGA 2484 0.4239 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVAELPVRSAKFIARKQWVVAGADDMHIRVYNYNTMDKVKIFEAHTDYIRCVAVHPNLPYVLSSSDDMLIKLWDWDKGWVCTQVFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKGSRRVVIGYDEGTIMVKLGREEPVASMDNSGKIIWAKHNEIQTVNIRSVGADTQIADGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESTSKIKIFSKNFQEKKSIRPTFSAERIFGGTVLVMCSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLVVIASDTSFYILKYNRDVVASYLDSKTAVDEQGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMSHLDRPMYLLGYLASQSKVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLDRANEVLPSIPKEHHNSVARFLESRGMIEDALEVATDPDYRFDLAMQLGRLEVAKSIATEVHSESKWKQLGELAMSTGKLEMAEECLKHAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFTLGKLEDCLQLLIESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVSPKAAESLADPEEYPNLFDDWQVALAVESKAAETRSEWEIYTFLQL 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00312 827 Gene3D - 11 300 IPR015943 GO:0005515
Aip09g00312 827 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Aip09g00312 827 PIRSF Beta'-COP 2 826 IPR016453 -
Aip09g00312 827 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Aip09g00312 827 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Aip09g00312 827 SMART WD40_4 131 171 IPR001680 GO:0005515
Aip09g00312 827 SMART WD40_4 174 215 IPR001680 GO:0005515
Aip09g00312 827 SMART WD40_4 88 127 IPR001680 GO:0005515
Aip09g00312 827 SMART WD40_4 4 43 IPR001680 GO:0005515
Aip09g00312 827 SMART WD40_4 46 85 IPR001680 GO:0005515
Aip09g00312 827 SMART WD40_4 218 257 IPR001680 GO:0005515
Aip09g00312 827 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Aip09g00312 827 PANTHER COATOMER 1 818 - -
Aip09g00312 827 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Aip09g00312 827 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Aip09g00312 827 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Aip09g00312 827 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Aip09g00312 827 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Aip09g00312 827 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Aip09g00312 827 SUPERFAMILY WD40 repeat-like 227 491 IPR036322 GO:0005515
Aip09g00312 827 PANTHER COATOMER SUBUNIT BETA'-1 1 818 - -
Aip09g00312 827 CDD WD40 17 297 - -
Aip09g00312 827 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Aip09g00312 827 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Aip09g00312 827 Pfam WD domain, G-beta repeat 133 171 IPR001680 GO:0005515
Aip09g00312 827 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Aip09g00312 827 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Aip09g00312 827 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Aip09g00312 827 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Aip09g00312 827 Gene3D - 590 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00312 Aip-Chr9 3001067 3009795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00312 51 309 Miscellaneous Gene Families AT5G08390 24.906 2.44e-18 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00312 K17302 - gmx:100818132 1600.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00312 09 3001067 3009795 Aip09g00312 09 3001067 3009795 ECH
Aip08g00130 08 848805 856881 Aip09g00312 09 3001067 3009795 PCT