Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03355 atgtttccaaaaCCACTTCCAGAACCCCATTCTCCACCGTATCTCCATCTTCTTCCACTTCCTCTTCTCACTCCACCTTCCCAAACCGTATTCTCAGATCCACGCTCCCATTTTCCTCCATTCTCACCAATAATAAGAAGCACCATTCCCTCAAAATATCAAACACCATCTCAAACAACCCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCGTCTGCATCGCCACCTCCGGTCCCGGCGCCACCAACCTCGTCTCCGGCCTCGCCGACGCGATGATGGACTCAATCCCTATCGTTGCCGTGACCGGCCAGGTTCCCCGCCGCATGATCGGAACCGACGCATTTCAAGAAACCCCAATCGTTGAGGTAACTCGATCTATCACGAAGCATAATTACCTTGTTCTTGATGTTGATGAAATCCCTAGGATTGTTAGAGAGGCATTTTTTGTAGCTACTACTGGTAGACCTGGACCTGTTTTGATTGATGTTCCTAAAGATGTTCAGCAACAATTGGCGGTTCCCAATTGGGATTTGCCTGTTAGGGTTGCTGGTTATGTTTCTAGGATGCCAAAGATTCCCAGTTTGGCGGAATTAGAGAGCGTTGTGAGGCTAGTTTCGGAGGCGAAGAAACCGGTTTTGTATGTTGGTGGTGGGTGTTTGAATTGTAGTGAGGAATTGAGAAGGTTTGTGGAGATTACGGGTATTCCGGTAGCGAGTACTTTGATGGGACTTGGTGTTTACCCTGTTGGTGGTGATGATTCTCTTCAGATGTTGGGGATGCATGGAACTGTTTATGCTAATTATGCTGTTGATAAGAGTGATTTGTTGCTTGCATTCGGGGTTAGGTTTGATGATCGTGTAACTGGGAAGCTTGAGGCTTTCGCGAGTAGGGCGAAGATTGTGCACATTGATATTGATTCTGCTGAGATTGGGAAGAACAAGATCCCACACGTGTCGATTTGCGCAGATGTGAAAGTGGCATTGGAAGGGATCAATGGGATCTTGGAGGAAAAGGGGGTCAATAAAAAGAATCTTGGTCTTGAGGATTGGAGGGAAGAGCTGAGTGTGCAGAAGCAGAAGTTCCCATTGAGTTATAAGACTTTTGGTGATCTGATTTCGCCGCAGCATGCAATTCAGGTTCTTGATGAGCTCACAAATGGGGATGCAATCATTAGTACCGGTGTAGGTCAGCATCAGATGTGGGCAGCACAGTTTTACAAGTACAAGAGGCCGAGGCAGTGGTTGACATCAGGGGGTCTTGGCGCTATGGGTTTCGGCTTGCCTGCTGCAATTGGCGCAGCTGTGGCTAACCCTGGAACTGTCGTTGTTGACATCGATGGGGATGGTAGCTTCATCATGAATGTACAAGAGTTGGCAACCATAAAGGTGGAGAATCTACCGGTTAAGATTCTGTTGTTGAATAATCAGCACTTGGGTATGGTTGTTCAGTGGGAAGACAGGTTCTACAAGTCCAATAGAGCTCACACATACCTCGGCAACCCTACGAATGAGGCTGAGATCTTTCCAAACATGTTGAAGTTCGCCGACGGTTGTGGAATACCAGCAGCACGTGTGACGAAGAAGGAAGATCTTAGAGCCGCAATCAAGAAGATGCTGGACACGCCCGGCCCTTACCTTCTTGATGTGATTGTGCCTCATCAAGAGCATGTCTTGCCAATGATCCCAAGTAATGGATCCTTCAATGATGTGATTACTGAGGGTGATGGAAGAACGAAATACTGA 1761 0.4611 MFPKPLPEPHSPPYLHLLPLPLLTPPSQTVFSDPRSHFPPFSPIIRSTIPSKYQTPSQTTLXXXXXXXXXXXXXXXGVCIATSGPGATNLVSGLADAMMDSIPIVAVTGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDEIPRIVREAFFVATTGRPGPVLIDVPKDVQQQLAVPNWDLPVRVAGYVSRMPKIPSLAELESVVRLVSEAKKPVLYVGGGCLNCSEELRRFVEITGIPVASTLMGLGVYPVGGDDSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKIPHVSICADVKVALEGINGILEEKGVNKKNLGLEDWREELSVQKQKFPLSYKTFGDLISPQHAIQVLDELTNGDAIISTGVGQHQMWAAQFYKYKRPRQWLTSGGLGAMGFGLPAAIGAAVANPGTVVVDIDGDGSFIMNVQELATIKVENLPVKILLLNNQHLGMVVQWEDRFYKSNRAHTYLGNPTNEAEIFPNMLKFADGCGIPAARVTKKEDLRAAIKKMLDTPGPYLLDVIVPHQEHVLPMIPSNGSFNDVITEGDGRTKY 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03355 586 CDD TPP_PYR_POX_like 77 171 - -
Aip08g03355 586 Pfam Thiamine pyrophosphate enzyme, central domain 205 335 IPR012000 GO:0000287|GO:0030976
Aip08g03355 586 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 76 585 IPR045229 -
Aip08g03355 586 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 76 176 IPR012001 GO:0030976
Aip08g03355 586 ProSitePatterns Thiamine pyrophosphate enzymes signature. 437 456 IPR000399 GO:0000287|GO:0030976
Aip08g03355 586 Gene3D - 370 556 - -
Aip08g03355 586 PANTHER ACETOLACTATE SYNTHASE 76 585 - -
Aip08g03355 586 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 76 188 IPR029061 -
Aip08g03355 586 SUPERFAMILY DHS-like NAD/FAD-binding domain 201 368 IPR029035 -
Aip08g03355 586 Gene3D - 72 195 - -
Aip08g03355 586 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 378 578 IPR029061 -
Aip08g03355 586 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 400 555 IPR011766 GO:0003824|GO:0030976
Aip08g03355 586 Gene3D - 204 369 - -
Aip08g03355 586 TIGRFAM acolac_lg: acetolactate synthase, large subunit, biosynthetic type 76 578 IPR012846 GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660
Aip08g03355 586 CDD TPP_AHAS 378 569 IPR039368 GO:0030976
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03355 Aip-Chr8 124823883 124826412 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03355 K01652 - rcu:8269225 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03355 08 124823883 124826412 Aip08g03355 08 124823883 124826412 ECH