Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03334 ATGGAGCTCTCAAAAGACCCGAATTCCAACCCGGGTCGAACCGAAGACTCCGATTCGGAGCTCGAACTCTACACTATCCCAAGCTCTTCAAGGTGGTTCGCATGGGACGAAATCCACGAGACAGAGAGAACAACGCTGAGAGAATTCTTCGATGGAACATCCATGTCGCGCTCACCCAAGATCTACAAGGAGTACAGAGACTTCGTCATCAACAAGTACAGGGAAGATCCTACGAGGAAGCTCCTCTTCACCGACGTCAGAAAATCACTCGTCGGCGACGTCACGCTCCTCCGCAAGGTCTTCACGGCGCTCGAAGGTTGGGGTTTGATCAACTACGGCGCAACCTCAGGGGACACCGACGCGGAAGGTTGTGGTGGTGGTGCTGAGGACGAAGGGTGGAGGGTTAGGGTTGAGGAAGGTGCGCCCAATGGGATAAGGGTAGTTGCGACACCGAACTCGCTGAAGCCGATTACACTGCCACGTGGCGCAAAGACGACTAAGGATGGTTCGGGTTCGGGTTCGGGTTTTAGTTCGGATTGTGTGAAATTGCCGCCGCTGGCGAGTTACTCGGATGTGTATGGGGATTTGATGAAGCAGAAGGAGGAGATGAATTGTGGGCTCTGTGGTGATAAAATTGGTTCTGGACATTACCGAAGTACCAAGGATAATTTCATGATTTGTGCAAAATGTTTCACAAATAAAAATTATGGAGATAATAGGTCTGCGGAGGATTTCACATTAACAGAGTCCGGTGAAAATAGTGGCGAACAGGGAGCTGTGTGGACTGAGGGAGAAACACTTCTCCTTTTAGAATCTGTTATGAAGCATGGAGATAACTGGGACCTAGTTGCTCAAAGTGTTCAAACAAAGAGTAAACTTGATTGCATCTCAAAACTCATTGAGCTGCCCTTTGGGGAGCTCATGTTGGGCTCTGCTCACCGAAATGGTAACAGTAATAGTGTTAATGGCTACGTGAACAATGTGAAACAAGTTCAGTCATCATCATCATCGTCTAACCATCAAGAAACTTCAAAGGCGCAGGATCAGTCTCACGATCTTAGGAATGAAAACGAGCAGAATGGAGATGCTGTTGAGGAAAGTCCTTCAAAAAGACAACGCGTTGCTCCTCTTTCAGATACCAGCAGTTCACTATTGATGCAGGTGGGGCTTATTGCTAGTGTGGTTGATCCTCATATCACAGCGGCTGCAGCTGATGCTGCTACTATGGCACTTTGTGATGAGAACCTGTGTCCAAGGGAGATATTTGATGTTGAAGAGGATTATGCTCTTAGCGTGAACTCTGCAAATAATTCAGCAAGAGCCCATGGGGATGAAGGTGTAGAGATGAAGTCGTCCAATCAATCAGAAATAGACGACAGAGGCCAAAAGGATGGCATACCCTTGACACTGCGTGTAAGAGCCGCCATTGCAACTGCTCTCGGAGCTGCTGCTGCACGAGCAAAGTTATTAGCTGACCAGGAAGACAGAGAGGTTGAACTTTTAGTAGCTACTATAATTGACGCACAGGTTAAGAAATTGCAACACAAGGTTAGACATTTTGATGATCTGGAGCTGTTGATGGAAAAGGAACATGCTGAAATAGAGGAGCTAAAAGATTCTATCTTAACTGAACGGATTGATGTTTTAAGGAGGACATTTAGATCTGGAATCACTAGACGGAAAGATTATTCTTATGTCAAATCTTAG 1707 0.4669 MELSKDPNSNPGRTEDSDSELELYTIPSSSRWFAWDEIHETERTTLREFFDGTSMSRSPKIYKEYRDFVINKYREDPTRKLLFTDVRKSLVGDVTLLRKVFTALEGWGLINYGATSGDTDAEGCGGGAEDEGWRVRVEEGAPNGIRVVATPNSLKPITLPRGAKTTKDGSGSGSGFSSDCVKLPPLASYSDVYGDLMKQKEEMNCGLCGDKIGSGHYRSTKDNFMICAKCFTNKNYGDNRSAEDFTLTESGENSGEQGAVWTEGETLLLLESVMKHGDNWDLVAQSVQTKSKLDCISKLIELPFGELMLGSAHRNGNSNSVNGYVNNVKQVQSSSSSSNHQETSKAQDQSHDLRNENEQNGDAVEESPSKRQRVAPLSDTSSSLLMQVGLIASVVDPHITAAAADAATMALCDENLCPREIFDVEEDYALSVNSANNSARAHGDEGVEMKSSNQSEIDDRGQKDGIPLTLRVRAAIATALGAAAARAKLLADQEDREVELLVATIIDAQVKKLQHKVRHFDDLELLMEKEHAEIEELKDSILTERIDVLRRTFRSGITRRKDYSYVKS 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03334 568 SUPERFAMILY Homeodomain-like 30 113 IPR009057 -
Aip08g03334 568 SMART sant 257 305 IPR001005 -
Aip08g03334 568 MobiDBLite consensus disorder prediction 330 344 - -
Aip08g03334 568 Coils Coil 520 540 - -
Aip08g03334 568 MobiDBLite consensus disorder prediction 1 20 - -
Aip08g03334 568 MobiDBLite consensus disorder prediction 156 177 - -
Aip08g03334 568 MobiDBLite consensus disorder prediction 443 462 - -
Aip08g03334 568 MobiDBLite consensus disorder prediction 438 462 - -
Aip08g03334 568 CDD SANT 261 298 IPR001005 -
Aip08g03334 568 Pfam Myb-like DNA-binding domain 261 299 IPR001005 -
Aip08g03334 568 ProSiteProfiles Myb-like domain profile. 253 295 IPR001005 -
Aip08g03334 568 MobiDBLite consensus disorder prediction 330 378 - -
Aip08g03334 568 ProSiteProfiles SWIRM domain profile. 24 121 IPR007526 GO:0005515
Aip08g03334 568 SUPERFAMILY Homeodomain-like 258 308 IPR009057 -
Aip08g03334 568 Pfam SWIRM domain 27 112 IPR007526 GO:0005515
Aip08g03334 568 Gene3D - 30 116 IPR036388 -
Aip08g03334 568 ProSiteProfiles SANT domain profile. 256 307 IPR017884 -
Aip08g03334 568 Pfam SWIRM-associated region 1 478 552 IPR032451 -
Aip08g03334 568 PANTHER SWI/SNF COMPLEX-RELATED 18 559 - -
Aip08g03334 568 PANTHER BRAHMA ASSOCIATED PROTEIN 155 KDA 18 559 - -
Aip08g03334 568 MobiDBLite consensus disorder prediction 345 369 - -
Aip08g03334 568 Gene3D - 257 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03334 Aip-Chr8 124601203 124604687 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03334 K11649 - gmx:100790238 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03334 08 124601203 124604687 Aip08g03334 08 124601203 124604687 ECH