Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03328 ATGAACAAGAGGAAGAGAGAAGAAGAAGAAGAAGAAGGAATCAGAATGGGAACGGATATCGTGTGGCAAACCCCAGCGAATCCCCCGCACCCTCACGACTACATCTTCCGAAACGGAATTCGATATGTTAAACCTTACTACTTCGAATTCATAGCTCATGTTAAGAATCGGTGGGCTGGGAAAACTATTGTGGATTTATTCGCCCAAGAGTTCAAAGGTCGACCTTATGAATATTATGTTAGTGCAGTGAAATGTGGAAGGATTCAAGTTGATGGTGAGAGGGTATCAGTTTCATACATAGTTAAATCATCACAGAAGATTAGCCATTTCGTACACAGGCATGAACCGCCTGTGATGGCTTGTGAGGTTCCAATTCTCCAAAAAGAACTAGACGTGCTGACTGTTTGTAAACCTGCATCTGTCCCTGTTCATCCATGTGGTCAATATCGTAAGAACACTGTTGTTGGCATCCTTCAAGCTGAGCATGGGCTGGCACCTGTATTTCCTGTTCATCGACTAGATCGCCTTGTGTCAGGACTTCTTATTTTAGCCAGAAATGCTTCAAAAGCTGACATTTTTAGGCAGCAGATTGAAGGTGGCTTAGTCCGGAAAAAGTATATAGCAAGAGTAGTTGGAGAATTTCCCAAGGATGAGCTAGTTGTTGATGCCAATATAGACTATAATGCTCGGGAAGGGAGGAGCACAGCGGAGGTCAGGGACTCTGCGAAGGGCAAGGCAGCCTCTACAAAATTTACTCGGATATCTTCTAATGGTGCTCAGAGTATTGTTTTATGTGAACCAATCACTGGTCGTACTCATCAGATTCGTGTTCATTTAAAGCATTCAGGACACCCAATAGCCAATGACATGCTGTACATATCAGATGAAACTGTCGATCGATCAAGTAAAGGTTCAAGTGCTGATAGATCAGCTTGCACATCTGCCACTGCTCTAACATCAAGTATTGAGGAAAAAGTCGTCAATGATTGTGAAGAGAAGTCCAATGTGGGTTTTAGCATTGATCCCATGTGTACAAACTGTCCAAATTTGGCACCAAAAGGATATGATACCGACGAAGAAGGTCTATGGTTACATTGTATTCAGTACTCTGGCCCTGATTGGACATATGAATGCCCATATCCTGATTGGGCCAAACTCACTCAGACAACTTAA 1173 0.4297 MNKRKREEEEEEGIRMGTDIVWQTPANPPHPHDYIFRNGIRYVKPYYFEFIAHVKNRWAGKTIVDLFAQEFKGRPYEYYVSAVKCGRIQVDGERVSVSYIVKSSQKISHFVHRHEPPVMACEVPILQKELDVLTVCKPASVPVHPCGQYRKNTVVGILQAEHGLAPVFPVHRLDRLVSGLLILARNASKADIFRQQIEGGLVRKKYIARVVGEFPKDELVVDANIDYNAREGRSTAEVRDSAKGKAASTKFTRISSNGAQSIVLCEPITGRTHQIRVHLKHSGHPIANDMLYISDETVDRSSKGSSADRSACTSATALTSSIEEKVVNDCEEKSNVGFSIDPMCTNCPNLAPKGYDTDEEGLWLHCIQYSGPDWTYECPYPDWAKLTQTT 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03328 390 Pfam RNA pseudouridylate synthase 132 281 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aip08g03328 390 ProSiteProfiles S4 RNA-binding domain profile. 61 123 - -
Aip08g03328 390 PANTHER PSEUDOURIDINE SYNTHASE 18 386 - -
Aip08g03328 390 Gene3D Pseudouridine synthase 116 366 - -
Aip08g03328 390 ProSitePatterns Rlu family of pseudouridine synthase signature. 170 184 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aip08g03328 390 CDD PseudoU_synth_ScRIB2 108 385 - -
Aip08g03328 390 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 18 386 - -
Aip08g03328 390 TIGRFAM rluA_subfam: pseudouridine synthase, RluA family 57 313 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aip08g03328 390 SUPERFAMILY Pseudouridine synthase 115 385 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03328 K15454 - gmx:100811500 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03328 08 124541975 124547280 Aip08g03328 08 124541975 124547280 ECH