Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03296 ATGGATAACGGCGAAGATAACGGCGTTAACGGCGCCGGCGGAACCACTACCAAGGAGGAGCAAGAGGAGGCATTGGTAGCTCTCATCGAACACCGTACTCGCGAAGTCAAAAACCTCCGTCACCGCCTCTCCTATTACAAATCGCAGCTTGAGGAAGCAGAAAAAAGGCTGCAAGATTCCGAGACAAAATTGGCTCGCCTTCGAGGTCAAACTAATAATGCTGTGTCATCTAGAAGTTCCTTAGACAATGGAATTAAAACTGTGAAGGTAGAACGTAGATCAAGCAGTCCAACAGATAGAAATGAAGATTCTTCCAAAAAACACCATCAATCCAAACCAGAACTTCTTATTCCTGCCGTGCAACCAAAAACTTCGCAACCAACACCGCCAAGATCTTCTACAAAAGCTGCCGTAACTTCTGGTTCTGAAGCAAGTCCATCAGTTCACAGTTCTGGTTCTAGAGTAAAATCTGAAATATCCCAAAGACCTTCTTCTGAGAAGAAGAGTACTGAAGACAAGGACAGAGGGACCAAAAGGAAGTTTGAGCAAAAAGAACACAAGGAATTGATTCCTTTAATACGCAAAAGTGCTTCACCAAAGTTGGTATATTGTCATACAAGCAACCATATCTCAAGTCAACACAAGAGGAAATTGCGGAGTCTTGCTTATTGTCCTGTAAATGATAATCTTTTCGTGACCAGTGCTTTGGATGGAGGGCTCAACTTGTGGCAAATTCAGGCTAGGGGATCATCAGCCTCCCGACTTAGCTCTACTGATTGTTCATCCTCAAAGCAGCGGAGATGGCCGGAAGATTTAGCCTGGCACCCAGATGGAAACAGGCTATTTGCAGTATACAGCGCCGATGGGGGAGACTCTCAAGTATCAGTTATGAATCTGAATAAAGGTCGAGGGGGAGATCGAGTAAGATACTTAGAGGACAAGCCGCATGTTAAGGGTATTATCAATGGCATTGTTTTTCCTCCCTGGGAAGATACATGTTTCCTAACTGGCGGAAGTGACCATGCTGTTGTGCTTTGGAGCGAACAAGATGGCGAGAAATGGAAGCCAAAAGCGTTGCACAGGAATCTTCATTCTTCTGCTGTCATGGGTGTTGCTGGTCTACATCATAAACAGATTGTGTTGTCTGCTGGTGCCGACAAGAGAATATTCGGGTTTGATGTTCGTGCTGGTAGAGCAGATTACAGGCATCAAGTTGATACTAAATGCATGAGTGTCCTACCCAATCCATGTGACTTCAATTTATTCATGGTTCAAACAGGGACTCATGAGAAGCAGCTAAGGTTATATGATATACGACTGAGGCAGACAGAACTTCATGCTTTCGGATGGAAGCAAGAAAGTAGCGATTCTCAATCGGCTCTGATAAATCAAGCTTGGTCTCCTGATGGACTATACATATCATCTGGTTCAGTAGATCCTGTTATCCACATATTCGACATCAGGTACAACGCGAACAAGCCTTCGCAGTCGATAAGAGCGCATCAGAAGCGCGTCTTCAAAGCAACATGGCTTCAGTCAATGCCTGTTCTCATTTCCATATCTTCGGATCTCAACATTGGATTGCACAAAATTTCATAG 1599 0.444 MDNGEDNGVNGAGGTTTKEEQEEALVALIEHRTREVKNLRHRLSYYKSQLEEAEKRLQDSETKLARLRGQTNNAVSSRSSLDNGIKTVKVERRSSSPTDRNEDSSKKHHQSKPELLIPAVQPKTSQPTPPRSSTKAAVTSGSEASPSVHSSGSRVKSEISQRPSSEKKSTEDKDRGTKRKFEQKEHKELIPLIRKSASPKLVYCHTSNHISSQHKRKLRSLAYCPVNDNLFVTSALDGGLNLWQIQARGSSASRLSSTDCSSSKQRRWPEDLAWHPDGNRLFAVYSADGGDSQVSVMNLNKGRGGDRVRYLEDKPHVKGIINGIVFPPWEDTCFLTGGSDHAVVLWSEQDGEKWKPKALHRNLHSSAVMGVAGLHHKQIVLSAGADKRIFGFDVRAGRADYRHQVDTKCMSVLPNPCDFNLFMVQTGTHEKQLRLYDIRLRQTELHAFGWKQESSDSQSALINQAWSPDGLYISSGSVDPVIHIFDIRYNANKPSQSIRAHQKRVFKATWLQSMPVLISISSDLNIGLHKIS 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03296 532 MobiDBLite consensus disorder prediction 55 191 - -
Aip08g03296 532 SUPERFAMILY WD40 repeat-like 210 531 IPR036322 GO:0005515
Aip08g03296 532 MobiDBLite consensus disorder prediction 160 191 - -
Aip08g03296 532 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 15 531 - -
Aip08g03296 532 MobiDBLite consensus disorder prediction 1 23 - -
Aip08g03296 532 Gene3D - 416 532 IPR015943 GO:0005515
Aip08g03296 532 Gene3D - 49 415 IPR015943 GO:0005515
Aip08g03296 532 MobiDBLite consensus disorder prediction 126 159 - -
Aip08g03296 532 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 15 531 - -
Aip08g03296 532 SMART WD40_4 256 298 IPR001680 GO:0005515
Aip08g03296 532 SMART WD40_4 353 393 IPR001680 GO:0005515
Aip08g03296 532 SMART WD40_4 198 244 IPR001680 GO:0005515
Aip08g03296 532 SMART WD40_4 449 486 IPR001680 GO:0005515
Aip08g03296 532 SMART WD40_4 304 347 IPR001680 GO:0005515
Aip08g03296 532 SMART WD40_4 491 530 IPR001680 GO:0005515
Aip08g03296 532 MobiDBLite consensus disorder prediction 85 113 - -
Aip08g03296 532 Coils Coil 36 70 - -
Aip08g03296 532 MobiDBLite consensus disorder prediction 64 84 - -
Aip08g03296 532 Pfam WD domain, G-beta repeat 463 486 IPR001680 GO:0005515
Aip08g03296 532 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 253 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03296 - - gmx:100799587 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03296 08 123986303 123991526 Aip08g03296 08 123986303 123991526 ECH