Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03294 ATGGGAAACTGCTGCTCTGACGTCGCCGGTGGCCATGCCTCCATCGGTACCACTGCGGGAGATCTCCGGCATCAGGCTGACACCGCCAACGACGCCGTCGACTACTTCCTCCGCTCCCGAGGCCACCGCGGCCTCTTCTCTCAGATCGAGTTATTGTTCTCCGCTTCGGGATTGCGCGATAGAGATGTGCTCTCAAAGAGTGACCCAATGTTGGTTCTTTATACGAAAGGAAAAAATGGAGCACTTGAGGAACTTGGGCGCACAGAAGTAGTTCTAAATTCATTGGATCCAACATGGATTACTAAACACACCCTCATTTATCATTTTGAGGTTGTCCAAGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAATGTAGATGTGAAGATGCTTAAGCTGGAAGAGCAGCAATTTCTTGGTGAGGCGACCTGTGCATTATCTGAGATAATTACAAGATTTGATCAATCATTGACGTTAGATCTACACAGAGATGACTTTATCACATCAACCCACTCACAGAACTATGGGAAGCTCTTAGTTCATTGTGAAGAATCTCTTAGCTCAAAGACTGCAATAGAGATGATTTTCAGGTGTTCGGATTTGGAATATAGAGATCTATTCTCAAGAAGTGATCCTTTTTTACTGATATCAAAAGTGGTTGAAGGTGGTATGCAAATTCCCATTTGCAAAACAGAAGTTATAAAGAATGATCTCAACCCAATGTGGAAGCCAGTGTTCTTGAATATTCAACAAGTAGGAGGCAAGGACAGTCCTTTGATAATAGAGTGCTATAACTTCAATAGCAATGGCAAACATGATCTGATGGGAAAAGTGAAGAGATCTTTGCTGGAGTTGGAAAAGATTCATTCCAGTGGCCAAGGAGAAAAATTATTTCTGCCTAACAAGGTGTTAAACAGCCAGTTATTTGTGGACAAATTCACTGAAAGTGTCCAATATACTTTCCTGGATTATGTGGCTGGGGGATTTGAATTGAACTTTATGGTGGCTGTTGACTTTACAGCTTCAAATGGGAATCCACGCCTTCCAGATTCTTTACATTATCTTGATCCTTCCGGGAGGCAAAATGCATACCAGAGGGCAATTGTTGAGGTTGGGGAGGTAATACAGTTTTATGACTCAGACAAGCGGTTTCCTGCATGGGGGTTTGGAGCACGACCAATTGATGGCCCTGTCTCCCATTGTTTCAACTTGAATGGAAGCAGTCATTACTGTGAGGTGGAAGGGATCCAAGGAATTATGACGGCATACACAAGTGCCTTACTTAATGTGTCTCTTGCAGGGCCGACTCTTTTTGGACCTGTCATAAGCAACGCCGCGCTGATTGCCAGCCATTCTGTAGCAAATGGTGGAAGGAAGTACTTTGTTTTGTTAATAATCACAGATGGAGTAGTGACAGATCTCCAAGAAACAAAAGATGCTCTTGTTAAAGCCTCGGACCTACCGTTATCAATTCTTATTGTTGGAGTAGGAGGAGCTGATTTCAAAGAAATGGAGGTTTTGGATGCAGACAAGGGAGAACCCCTTGAAAGTTCATCTGGACGCGTTGCTTCCCGTGATATAGTCCAATTTGTTCCGTATCGGGATGTTCAAAGTGGAGAGATTTCAGTAGTTCAAGCGCTTCTAGCGGAGTTACCAACGCAATTTTTAACCTACGTGCGAAGTAGAAACATCCAACCGAGCCTCTAG 1716 0.4359 MGNCCSDVAGGHASIGTTAGDLRHQADTANDAVDYFLRSRGHRGLFSQIELLFSASGLRDRDVLSKSDPMLVLYTKGKNGALEELGRTEVVLNSLDPTWITKHTLIYHFEVVQVLVFRVYDVDTQFHNVDVKMLKLEEQQFLGEATCALSEIITRFDQSLTLDLHRDDFITSTHSQNYGKLLVHCEESLSSKTAIEMIFRCSDLEYRDLFSRSDPFLLISKVVEGGMQIPICKTEVIKNDLNPMWKPVFLNIQQVGGKDSPLIIECYNFNSNGKHDLMGKVKRSLLELEKIHSSGQGEKLFLPNKVLNSQLFVDKFTESVQYTFLDYVAGGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRQNAYQRAIVEVGEVIQFYDSDKRFPAWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMTAYTSALLNVSLAGPTLFGPVISNAALIASHSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEVLDADKGEPLESSSGRVASRDIVQFVPYRDVQSGEISVVQALLAELPTQFLTYVRSRNIQPSL 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03294 571 CDD C2A_Copine 47 168 - -
Aip08g03294 571 PANTHER COPINE 1 570 IPR045052 GO:0005544
Aip08g03294 571 CDD vWA_copine_like 304 558 IPR010734 -
Aip08g03294 571 ProSiteProfiles C2 domain profile. 177 301 IPR000008 -
Aip08g03294 571 SMART C2_3c 198 297 IPR000008 -
Aip08g03294 571 SMART C2_3c 47 161 IPR000008 -
Aip08g03294 571 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 167 IPR035892 -
Aip08g03294 571 SUPERFAMILY vWA-like 334 516 IPR036465 -
Aip08g03294 571 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 179 289 IPR035892 -
Aip08g03294 571 SMART VWA_4 333 530 IPR002035 -
Aip08g03294 571 Gene3D C2 domain 51 196 IPR035892 -
Aip08g03294 571 ProSiteProfiles C2 domain profile. 29 162 IPR000008 -
Aip08g03294 571 Pfam Copine 354 569 IPR010734 -
Aip08g03294 571 CDD C2B_Copine 195 290 IPR037768 -
Aip08g03294 571 PANTHER PROTEIN BONZAI 2 1 570 IPR031116 GO:0005544|GO:0060548
Aip08g03294 571 Pfam C2 domain 198 294 IPR000008 -
Aip08g03294 571 Pfam C2 domain 54 154 IPR000008 -
Aip08g03294 571 Gene3D C2 domain 197 314 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03294 Aip-Chr8 123970813 123977182 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03294 - - gmx:100807801 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03294 08 123970813 123977182 Aip08g03294 08 123970813 123977182 ECH
Aip03g03340 03 109801446 109806288 Aip08g03294 08 123970813 123977182 PCT