Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03289 ATGAAGTCAACGAATCCTGAACCTGAAAAATCATCATCACCATCATCATCATCAAAGGCAGAAACATTAGATTCGGTGAAAGAAAAAGAAGAATCAACAACAACAGCTCAAAATGGTGGTTCATTATTGAAGGATAGCAGTGATGCTGAGGTCACAAAAATCACTCTCATGAGAGCTTTTGTTGAAAGCAAAGATCCGGCTTCTAAGGATGTAGATGATTTAACACTTAGAAGGTTCTTGAGGGCACGTGAGTTGGATGTGGAGAAAGCTTCTTACATGTTCCTTAAGTACCTGAAATGGAAACTCTCTTTTGTGCCAAATGGAGTGTCTCCATCAGAGATTCCTGAGGAACTTGCACACAGGAAATTGTTCTCTCAAGGCTTTGATAAACAGGGTAGACCTATAGTTCTTGCATTTGCTGCCAAACATTACCAAGGAAGTGATGGTGGTGATGGCTTCAAAAGGTTCGTAGCATTTACCATTGATAAGTTATGTTCAAGGATGCCAGCGGGGCAAGAAAAGTTTTGTGCTATAGCAGATATTAAGGGTTGGGGATATGCAAACAGTGACATTCGTGGCTACCTTAATGCTCTAACCATTTTGCAGGATTACAACCCAGAAAGAATGGGGAAGCTCTTCATTTTGCATGCACCTTATGTGTTTATGAAAGTGTGGCAAATTATTTATCCTTTTATTGACAACAACACCAAAAAGAAGATAGTATTTGTGGACAACAAAAAGATAACACGAACATTGCTAGAAGAAATAGATGAGAGCCAGCTTCCAGAGATTTATGGTGGTAAATTGCCATTAGTCCCAATCGAAAATTGCTGA 834 0.3933 MKSTNPEPEKSSSPSSSSKAETLDSVKEKEESTTTAQNGGSLLKDSSDAEVTKITLMRAFVESKDPASKDVDDLTLRRFLRARELDVEKASYMFLKYLKWKLSFVPNGVSPSEIPEELAHRKLFSQGFDKQGRPIVLAFAAKHYQGSDGGDGFKRFVAFTIDKLCSRMPAGQEKFCAIADIKGWGYANSDIRGYLNALTILQDYNPERMGKLFILHAPYVFMKVWQIIYPFIDNNTKKKIVFVDNKKITRTLLEEIDESQLPEIYGGKLPLVPIENC 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03289 277 CDD SEC14 124 268 IPR001251 -
Aip08g03289 277 SUPERFAMILY CRAL/TRIO domain 112 270 IPR036865 -
Aip08g03289 277 SUPERFAMILY CRAL/TRIO N-terminal domain 43 108 IPR036273 -
Aip08g03289 277 SMART sec14_4 117 270 IPR001251 -
Aip08g03289 277 SMART CRAL_TRIO_N_2 72 97 IPR011074 -
Aip08g03289 277 MobiDBLite consensus disorder prediction 1 21 - -
Aip08g03289 277 PANTHER OS03G0850700 PROTEIN 29 276 - -
Aip08g03289 277 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 111 273 IPR001251 -
Aip08g03289 277 MobiDBLite consensus disorder prediction 1 44 - -
Aip08g03289 277 Pfam CRAL/TRIO domain 120 267 IPR001251 -
Aip08g03289 277 PANTHER POLYPHOSPHOINOSITIDE-BINDING PROTEIN 29 276 - -
Aip08g03289 277 Gene3D - 3 275 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03289 Aip-Chr8 123910718 123915265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03289 76 240 Acyl Lipid Metabolism Gene Families AT1G55840 23.889 3.35e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03289 - - gmx:100797666 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03289 08 123910718 123915265 Aip08g03289 08 123910718 123915265 ECH
Aip03g03343 03 109820353 109826603 Aip08g03289 08 123910718 123915265 PCT