Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03210 ATGTCTAAATTGAAATCTTCATCATCATCTTCAATGTTACTTCCTCCACTTCTTCTATCTCTTCTCCTCATTGTTCCAACATTCTCAACATCAAGAAAAGTTCTTGATGAGAATCACCATGAAGGGATCATCAGAGTCAACCTTCGCCATGTTGACTCCGGCAAGAACCTAACCAAGCTGGAGCGTGTCCAACACGGCATGAAGCGCGCCAAGAGCCGCCTCCAGCGGCTCAACGCAATGGTAACAAAAAAACAATCCCAATTCTCTAAAAGCGAAGAACTAGATTCAGATTCAGAATCAGAATCTGAATCTAGTTCTTCGCAAATCCAGTCTCCAATACACGCGGGGAACGGGGAGTACCTAATGGAACTAGCCATAGGTACTCCTCCAAAGTCGTACCCCGCGATATTGGACACTGGTAGCGACCTCATATGGACACAATGCCAGCCTTGTTCCCAATGTTACAAGCAACCAACACCTATCTTCGACCCCAAGAAATCTTCGAGTTTCTCGAAGCTTTCTTGCGGAAGCAATCTATGCAACGTTCTACCTTCCTCCAGCTGTAGCAGCGGCGGCGGCGGCGACAGCGAAGGCTGCCAGTATATGTACTCATACGGCGATTATTCCGTCACACAAGGCGTTTTAGCAACGGAGACTTTTACTTTTGGCAGTTCTAAGATTAAAAGCATTGGATTTGGATGCGGCGAAGATAACCAAGGAAGTGGATTCGAACAAGCTTCCGGTCTAGTCGGACTAGGCCGGGGGCCATTATCGCTTGTTTCGCAGCTCAAAGAGCCGAAATTTTCGTATTGCTTACAATCCATTGATGACAGAAAAAACAGTGTTCTTTTGTTAGGATCATTGCCGAAAACGAAAAACGCGAAAGGAGCTGTAACGACACCGTTGCTTAAGAATCCGATGCAGCCTTCGTTTTACTTCCTTGATCTGCAAGGAATCTCGGTTGGTGGAACTCAATTGAGCATTGAGGAATCGACGTTTGAACTCGGCAATAACGGAAGTGGTGGCTTGATCATTGATTCAGGGACAACAATTACATACATTGAAGAAAATGCTTTTGATGCATTGAAGAAGGAGTTTGTTTCACAAATGGATTTGCCAGTGGATAATTCTGGATCAACGGGGCTTGATGTGTGCTTCAGTTTGGAGTCTGCTACGGGTCGAATCGAGTTGGTGATGTGA 1200 0.4558 MSKLKSSSSSSMLLPPLLLSLLLIVPTFSTSRKVLDENHHEGIIRVNLRHVDSGKNLTKLERVQHGMKRAKSRLQRLNAMVTKKQSQFSKSEELDSDSESESESSSSQIQSPIHAGNGEYLMELAIGTPPKSYPAILDTGSDLIWTQCQPCSQCYKQPTPIFDPKKSSSFSKLSCGSNLCNVLPSSSCSSGGGGDSEGCQYMYSYGDYSVTQGVLATETFTFGSSKIKSIGFGCGEDNQGSGFEQASGLVGLGRGPLSLVSQLKEPKFSYCLQSIDDRKNSVLLLGSLPKTKNAKGAVTTPLLKNPMQPSFYFLDLQGISVGGTQLSIEESTFELGNNGSGGLIIDSGTTITYIEENAFDALKKEFVSQMDLPVDNSGSTGLDVCFSLESATGRIELVM 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03210 399 Coils Coil 60 87 - -
Aip08g03210 399 Pfam Xylanase inhibitor N-terminal 120 287 IPR032861 -
Aip08g03210 399 Gene3D Acid Proteases 287 398 IPR021109 -
Aip08g03210 399 CDD pepsin_A_like_plant 119 394 IPR034161 -
Aip08g03210 399 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 135 146 IPR001969 GO:0004190|GO:0006508
Aip08g03210 399 Gene3D Acid Proteases 94 286 IPR021109 -
Aip08g03210 399 SUPERFAMILY Acid proteases 112 393 IPR021109 -
Aip08g03210 399 Pfam Xylanase inhibitor C-terminal 312 391 IPR032799 -
Aip08g03210 399 PANTHER OS07G0603500 PROTEIN-RELATED 20 393 - -
Aip08g03210 399 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 343 354 IPR001969 GO:0004190|GO:0006508
Aip08g03210 399 PANTHER OS08G0469000 PROTEIN 20 393 - -
Aip08g03210 399 MobiDBLite consensus disorder prediction 81 112 - -
Aip08g03210 399 PRINTS Pepsin (A1) aspartic protease family signature 343 354 IPR001461 GO:0004190|GO:0006508
Aip08g03210 399 PRINTS Pepsin (A1) aspartic protease family signature 126 146 IPR001461 GO:0004190|GO:0006508
Aip08g03210 399 ProSiteProfiles Peptidase family A1 domain profile. 120 399 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03210 Aip-Chr8 122857564 122859344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03210 103 362 Miscellaneous Gene Families AT1G44130 27.857 2.57e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03210 - - adu:107463277 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03210 08 122857564 122859344 Aip08g03210 08 122857564 122859344 ECH