Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03119 ATGTCTACGTTTTCTACTCTGAGGAGGCCCTCACTGTTAATAACCCAACGCCTGCACCACTCTTCACAAACATGCACACCAATAATCCAACCCAATAATAATAATAATCAAAAGAAGAAGCTGGGTTGTTTGGGGATTGTGGTTGGAATTTTTGTGTGTTGTTCCTTCTTCGTTCCCATCACTACCAACAAATCCAACTCCCCTTCATCTAGTCATGATGATGATGCAAACACTTCAACTTTTTCTTCACATTCTTTGTTTAGAAAACTCTCACTTCCACACAACACACACAGGTTGCTCTTTGGAGATGTGTACAGGAGGAAAGTTTTCTTCAACTATGAGAAGCGCATGCGTTTGCATAGTCCTCCCGAGAAGGTATTTGAATACTTTGCATCATGCCGGAGTCCGGAAGGAGAGGTGCTGATGGAGGCAGCAGACCTAATGAGAGCAGTGGTTGCGGTGTTCCCGCCGTCGGAGTCGAATGTTGTGAGGGAAGGATACTTGAAAGGTGAAAGAAGAAGTCCAGGCCACCTTCGTTGTCCCCCTTCTCTGTTTTTCATGCTCTTTGATGTCAACAATGATGGCCTTATATCTTTCAACGAGTATATCTTTTTGGTAACACTACTTAGCATACCAGAATCAAGTTTTTCTGCGGCATTTAAAATGTTTGACATGGATAACGATGGGGAGATAGATAAGGAAGAATTCAAGAAAGTGATGGAATTGATGCGATCTCATAATAGTTATAGACAAGGTGCTCATCACCATAGGGATGGAATGAGAAAAGGCTCAAAGGTCAATGATGATTGTGTAGAAAATGGAGGTGTTTTGGAATATTTTTTTGGCAAAGATGGAAAGGGACGCCTTAGCATTCATAGATTCTTGCAATTTATGAGAGACTTGCATCATGAAATACTAAGGCTGGAGTTTGATCATTATGACTACAAATCAAGAAAAACTATATCTGCCAAGGACTTTGCTCTCTCAATAGTTGCATCTGCTGATCTGAGTCATCTGGGTAGGTTGCTAGATTTGGTTGAAGAAATGAACAATGATCCAAGCTTTAAGGATGTACGCATCACATTTGAAGAGTTCAACAATTTTGCAGAGCTAAGGAAAAAATTGCTTCCATTTTCATTGGCCATTATTGGTTTTGCAAAAGTGAATGGCTTGTTAAGAAGAGAAGATTTTCAGCGAGCTGCATCACATGTTTGTGGATTATCACTTTCTGATAACGTGGTTAAGATTGTTTACCATTTGTTTGACACAAATGGGGATGGACACTTAAGTTCAGATGAGTTTGTAAGAGTGCTACACAACAAAGAAAATGATATCGCTCAACCTATGGAGACAGGGATCTTGCGTTTCTTGTCTTGCTGTTGGAACTGTAAGCATAGCTTCCCATACTCGCGCTTGTTTTCTTAG 1425 0.4049 MSTFSTLRRPSLLITQRLHHSSQTCTPIIQPNNNNNQKKKLGCLGIVVGIFVCCSFFVPITTNKSNSPSSSHDDDANTSTFSSHSLFRKLSLPHNTHRLLFGDVYRRKVFFNYEKRMRLHSPPEKVFEYFASCRSPEGEVLMEAADLMRAVVAVFPPSESNVVREGYLKGERRSPGHLRCPPSLFFMLFDVNNDGLISFNEYIFLVTLLSIPESSFSAAFKMFDMDNDGEIDKEEFKKVMELMRSHNSYRQGAHHHRDGMRKGSKVNDDCVENGGVLEYFFGKDGKGRLSIHRFLQFMRDLHHEILRLEFDHYDYKSRKTISAKDFALSIVASADLSHLGRLLDLVEEMNNDPSFKDVRITFEEFNNFAELRKKLLPFSLAIIGFAKVNGLLRREDFQRAASHVCGLSLSDNVVKIVYHLFDTNGDGHLSSDEFVRVLHNKENDIAQPMETGILRFLSCCWNCKHSFPYSRLFS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03119 474 SUPERFAMILY EF-hand 185 299 IPR011992 -
Aip08g03119 474 CDD EFh_MICU 216 440 - -
Aip08g03119 474 Pfam EF-hand domain pair 394 438 IPR002048 GO:0005509
Aip08g03119 474 Pfam EF-hand domain pair 186 207 IPR002048 GO:0005509
Aip08g03119 474 SUPERFAMILY EF-hand 277 440 IPR011992 -
Aip08g03119 474 Gene3D - 276 375 - -
Aip08g03119 474 CDD EFh 186 240 IPR002048 GO:0005509
Aip08g03119 474 Gene3D - 387 461 - -
Aip08g03119 474 Gene3D - 125 274 - -
Aip08g03119 474 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 474 IPR039800 GO:0005509|GO:0006851
Aip08g03119 474 ProSitePatterns EF-hand calcium-binding domain. 224 236 IPR018247 -
Aip08g03119 474 ProSiteProfiles EF-hand calcium-binding domain profile. 409 444 IPR002048 GO:0005509
Aip08g03119 474 Pfam EF hand 217 242 IPR002048 GO:0005509
Aip08g03119 474 ProSiteProfiles EF-hand calcium-binding domain profile. 211 246 IPR002048 GO:0005509
Aip08g03119 474 PANTHER CALCIUM-BINDING EF HAND PROTEIN 1 474 - -
Aip08g03119 474 ProSitePatterns EF-hand calcium-binding domain. 422 434 IPR018247 -
Aip08g03119 474 SMART efh_1 413 441 IPR002048 GO:0005509
Aip08g03119 474 SMART efh_1 215 243 IPR002048 GO:0005509
Aip08g03119 474 SMART efh_1 185 209 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03119 Aip-Chr8 121323739 121329044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03119 85 406 EF-hand Containing Proteins AT4G32060 65.217 1.84e-143 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03119 K22827 - gmx:100786375 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03405 06 130908414 130912533 Aip08g03119 08 121323739 121329044 PCT