Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03089 ATGGGAGATGATAGCAGGTTGATCATGGAGGAAGACAAAGATTTCCACTCTCTTGACAATTCTTCGCCATCACTAATACCGTCTCTGACGATGCACTTCTCTTCGCTGATGATCGACGTTGAAGATCGCAGCAGTATCGTTGCCACAAAAACCTTTTCCTATAACAAGCTTCCTTCTGAACCATTCACCCTCTCCATTCTCAAATTGGACGGATCTTGCTTCCATGTTGAAGTTGCGAAAACGGCAACTGTTGCAGAACTCAATCGTGCGGTGGAGGCGGTTTTTAGTCACACACCTCAGAAATGGCCAGAGGAAATACCGTGGGCTCATGTTTGGGGGCAATTTTGCTTATGTTATGAAGGACGTAAGCTTGTCATTGAAACAACTTATCTTAGAGATTATGGCATCAAGGATGGTGACCAGCTTCGTTTCATTCGTCATGTACCTAATACTTGTTTTCAAAGAAAGAGGCTAAAGAAAAGAGTTGTCAATCTGAAAATAAAAAGGAGGTATAGGTCATCCTCCAAAGCGAATAGATATCAACAGAAACTACGATGTGGAGGTGATGACGACATTGGTTTCGATGAAGGATATCTTGTTGGCAAGGAGAGATTAACGGGCTTTTTGGGAGGTTTGTTCTCATACAACCGGATGGCAGTTGCGGAAAGAGCAAGAACTGAAAGCAGGGTTTGCCCCTCATCCATTGCTGAAGTGAATTTCAAGCTTCTGTGCATAGTGATGTATATGAATGGAGTTAGGGCTCTCAAAGAAAGAACTGCATATATGGTACGCACATTTTCTACTCTCCTTGGGTACAATATAGAGGAGTCTTACAATTAA 840 0.4262 MGDDSRLIMEEDKDFHSLDNSSPSLIPSLTMHFSSLMIDVEDRSSIVATKTFSYNKLPSEPFTLSILKLDGSCFHVEVAKTATVAELNRAVEAVFSHTPQKWPEEIPWAHVWGQFCLCYEGRKLVIETTYLRDYGIKDGDQLRFIRHVPNTCFQRKRLKKRVVNLKIKRRYRSSSKANRYQQKLRCGGDDDIGFDEGYLVGKERLTGFLGGLFSYNRMAVAERARTESRVCPSSIAEVNFKLLCIVMYMNGVRALKERTAYMVRTFSTLLGYNIEESYN 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03089 279 Gene3D - 57 153 - -
Aip08g03089 279 PANTHER - 43 196 - -
Aip08g03089 279 PANTHER - 198 237 - -
Aip08g03089 279 SUPERFAMILY Ubiquitin-like 58 150 IPR029071 -
Aip08g03089 279 CDD Ubl_SNRNP25 62 147 IPR040610 -
Aip08g03089 279 Pfam Ubiquitin-like domain 63 148 IPR040610 -
Aip08g03089 279 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 198 237 IPR039690 GO:0000398|GO:0005689
Aip08g03089 279 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 43 196 IPR039690 GO:0000398|GO:0005689
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03089 Aip-Chr8 120822107 120824455 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03089 - - ahf:112770563 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03089 08 120822107 120824455 Aip08g03089 08 120822107 120824455 ECH
Aip06g03370 06 130488852 130492332 Aip08g03089 08 120822107 120824455 ECH