Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03074 ATGAGCTCAATCCCACCATGCCTTCGTCTCTTGCAAGGAACCATAAATCCAAGCACGAGAGAGTTAAAGCGAATCCACGCCCACGCAATCACCAATGGCCTTGCACGATTCTCCTACGTCTCCAGCAGACTCTTGGCCTTCTATTTCCAATGCCACCAGCGCAACCGCCGCAATATGCGCTGTTTAGAGGCCTTTTTCATTCACATGCCAATTCACACTGTCTTCGATTTCAATGTCATGATAACAGCTTTTTCAAGAGACTCACAATTTTACAACTGTTTTCTGCTTTTCAAACAAATGCTAGCCACTGGTGTTAGGCCCAACTCTCACACCTTCACCATGTTTGTCAAATCTTGCCGTGGCTCTTTGTCTCTCCTCCAACAAGCCCATGCTCAAGTGGTGAAGTTAGGGAGTGTGGATTATGATGCTTTTGTAGTGAGTTCTTTGATTGGTGTTTATTGTGATCATGGAGAGGTTGGTGTTGCACGCCAGGTGTTCGATGAATGTTCCAACAAGAATGTGGTGTGTTGGACTGGTCTTGTTACTGGTTATTGTAATAATGGTTTAATTGAGAAAGCAAGGCTGTTGTTTGATGAGATGCCGCAAAGGAATGAGGTATCCTACAGCGCCATGGTGTCTGGGTATGTGAGAAATGGTTGTTTCAATGAGGGCATTCAAGTTTTCCACGAGCTCAAGTGTTGTGGAAATGATGTTAATTTGAATGGCTCTCTTCTGGTGAGTGTGCTCAATGCATGTGCTGCTGTGGGTGCATTTGAAGAAGGCAAATGGATTCACAGTTACATTGATGAAAATGGTTTGGAGTATGAACTCGAACTGGGGACTGCGTTGATTGATTTCTACACCAAGTGTGGGTGGGTAGAAGAGGCAGAGAAAGTGTTTGATAGTATGCCTAGTAAGGATGTTGCTACTTGGAGTGCTATGATATTGGGTTTGGCTATTAATGGAAAGAATTATATGGCTCTTGAGCTTTTCGATAAGATGGAGAAGGTTGGACCCAAACCCAATGCAGTTACTTTTGTTGGTATTCTAACTTCCTGCAATCACAAGGACTTGTTGACTAAAGCGTGGTGGTTTTTTGAACGAATGAGTGGAAAATATGGCATCCTACCATCCATTGAACACTATGGATGCATGGTTGATATTTTGGCGCGAGGCGGGCGAATCAAAGATGCTTTAGCGTTAGTTGCTAGGATGCCGATAGAACCGGATGGAGCCATATGGGGGTCTTTGCTCAACGGATGCATGATGCATTGTCATGTTGAACTGGCACATAGAGTTGGGAAGTATTTGATAGAATTGGAGCCTCAACGTAGTGGATATTACATCCTTCTAGCAAACATGTATGCAAGTACGGGCAAATGGGAAGGTGTCTCCGAGACGAGAAGACTGATGAAAAAAAGGGGAGTGTCAACCATTTCTGCTTGGAGTTTCATAGAAATTGACCAGTCCATCCACAAATTTGTTGCTGATGATAAGTGTTGTACATATTCAGAAGAAATTTACAGAGTTTTAAACCACTTGAAATTTCTTTTAAAAGGTGAAAATTGTGTCGGTGATGACGATGGCTTGCGGTTTCAAATGGTTAGGGTTGATGTAGACCCCAGTGTTGCTGAAATTACAGAAATGGCATCTCCAAATGGAAATGTTGAAAATTTTGATGAGTTGGATGGCGCTGCAACTGATAACTCATCTGTGGTGGAAATCAGGGAAGTAGCAAATGGCAGCAGCAATGGCAACAATGTGGACAATTCTAATGATGAGGATGTTACTACAGTAGAGGATCAATCAAGGCAATTAAGAGCTCAAAAGGGTCCTGTGAAGGAAAAGTGCGCAAAGCCCACAGGTTCGAAAGGTGTTCATGCAAACTCGGTGAAAAGATGCAAAGATGGAAAAGATGAACATGCATCATCTGCTGTTTCAAATGGTACTTCAGCTTCAGAACCCCACCCTAGGCAGCCTGCCAAACTCAGTTCGTATAATGACAAGGAAACTCGGTTGTCCAAGCACCCTGGAAAATCTGATCCAGTGTCTTCTGAAGTACCACTGGACAAAGCTAAACCAAGATCATTGAAGAAAGGGCCCGCTGAAAATGTTCAAGGAGGAACAGAATGTTCTTCTCCTACTGCAGAAGATGCTAAACATCGCAGGGTTGGGGCACTTCCCAATTATGGATTCAGCTTCAAATGTGATGAGCGAGCTGAGAGAAGAAAACAGTTTTACTCAAAGCTCGAGGAAAAGATTCACGCAAAGGAAGTGGAGGAGAGTAACCTACAAGCAAAAACCAAGGAGACCCAAGAAGCTGAGATTAAGATGCTTAGGAAGAGTCTTGCATTTAAAGCAACTCCAATGCCTAGTTTTTACCAGGAGCCTACTCCTCCAAGGGTGGAGTTAAAGAAGGTAAGTTTCTCTCTGTGTATACATGCTGGCATACGCATGGCTCTGCATCTAATGGCATCCAGTCCTAGTGTGTAA 2493 0.4352 MSSIPPCLRLLQGTINPSTRELKRIHAHAITNGLARFSYVSSRLLAFYFQCHQRNRRNMRCLEAFFIHMPIHTVFDFNVMITAFSRDSQFYNCFLLFKQMLATGVRPNSHTFTMFVKSCRGSLSLLQQAHAQVVKLGSVDYDAFVVSSLIGVYCDHGEVGVARQVFDECSNKNVVCWTGLVTGYCNNGLIEKARLLFDEMPQRNEVSYSAMVSGYVRNGCFNEGIQVFHELKCCGNDVNLNGSLLVSVLNACAAVGAFEEGKWIHSYIDENGLEYELELGTALIDFYTKCGWVEEAEKVFDSMPSKDVATWSAMILGLAINGKNYMALELFDKMEKVGPKPNAVTFVGILTSCNHKDLLTKAWWFFERMSGKYGILPSIEHYGCMVDILARGGRIKDALALVARMPIEPDGAIWGSLLNGCMMHCHVELAHRVGKYLIELEPQRSGYYILLANMYASTGKWEGVSETRRLMKKRGVSTISAWSFIEIDQSIHKFVADDKCCTYSEEIYRVLNHLKFLLKGENCVGDDDGLRFQMVRVDVDPSVAEITEMASPNGNVENFDELDGAATDNSSVVEIREVANGSSNGNNVDNSNDEDVTTVEDQSRQLRAQKGPVKEKCAKPTGSKGVHANSVKRCKDGKDEHASSAVSNGTSASEPHPRQPAKLSSYNDKETRLSKHPGKSDPVSSEVPLDKAKPRSLKKGPAENVQGGTECSSPTAEDAKHRRVGALPNYGFSFKCDERAERRKQFYSKLEEKIHAKEVEESNLQAKTKETQEAEIKMLRKSLAFKATPMPSFYQEPTPPRVELKKVSFSLCIHAGIRMALHLMASSPSV 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03074 830 Pfam PPR repeat 173 200 IPR002885 -
Aip08g03074 830 MobiDBLite consensus disorder prediction 597 614 - -
Aip08g03074 830 Gene3D Tetratricopeptide repeat domain 170 232 IPR011990 GO:0005515
Aip08g03074 830 MobiDBLite consensus disorder prediction 663 679 - -
Aip08g03074 830 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 5 516 - -
Aip08g03074 830 Pfam PPR repeat 206 235 IPR002885 -
Aip08g03074 830 Pfam PPR repeat 381 405 IPR002885 -
Aip08g03074 830 Pfam E motif 424 485 IPR046848 -
Aip08g03074 830 TIGRFAM PPR: pentatricopeptide repeat domain 206 235 IPR002885 -
Aip08g03074 830 TIGRFAM PPR: pentatricopeptide repeat domain 175 204 IPR002885 -
Aip08g03074 830 TIGRFAM PPR: pentatricopeptide repeat domain 281 308 IPR002885 -
Aip08g03074 830 TIGRFAM PPR: pentatricopeptide repeat domain 77 108 IPR002885 -
Aip08g03074 830 Pfam Targeting protein for Xklp2 (TPX2) domain 732 802 IPR027329 -
Aip08g03074 830 Gene3D Tetratricopeptide repeat domain 233 493 IPR011990 GO:0005515
Aip08g03074 830 Coils Coil 747 777 - -
Aip08g03074 830 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Aip08g03074 830 MobiDBLite consensus disorder prediction 579 722 - -
Aip08g03074 830 Pfam PPR repeat family 74 119 IPR002885 -
Aip08g03074 830 Pfam PPR repeat family 306 353 IPR002885 -
Aip08g03074 830 Gene3D Tetratricopeptide repeat domain 18 137 IPR011990 GO:0005515
Aip08g03074 830 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 73 107 IPR002885 -
Aip08g03074 830 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Aip08g03074 830 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 5 516 - -
Aip08g03074 830 MobiDBLite consensus disorder prediction 643 662 - -
Aip08g03074 830 MobiDBLite consensus disorder prediction 579 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03074 Aip-Chr8 120496924 120504420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03074 23 528 Glycoside Hydrolase AT3G49170 30.799 1.07e-69 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03074 - - cam:101514149 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03074 08 120496924 120504420 Aip08g03074 08 120496924 120504420 ECH
Aip06g03359 06 130343472 130348041 Aip08g03074 08 120496924 120504420 PCT