Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03073 ATGTCTCAAGTCTTTGGCTTTTCAGGTGGTGACGATTTTTGCACTGGGGGGTCAGTATATGCGAACCCAAAGGATGCTAACATCTTCTTGTCGCTCGGTCGATCAGTTGACTTTTACTACCCTCTTCCTAAGAGGTCTCGCATCAGCGTTTCATTTGATCTCGATGGAGATTGGTTTGAGCAGAAGCAGAAGACATCTATTGAAGCCCTGCCAGATGAGTGCCTCTTTGAGATTCTTAGGAGATTGCCTGCTGGCCAAGCTAGGAGCGCTTGCGCTAACGTGTCAAAGCGCTGGCTTATGCTTCTAAGCAGCATCTCCAATAGTGAGATTTGCAGCAACTCAAATGAAAAGGAGCTTAGTGACAAGGAGGGTGATGATCTGGAATTCGGAGATGGGGGATTCCTCTCCCGGAGCTTGGAAGGAAAGAAGGCTTCTGATGTTAGACTCGCTGCCATCGCTGTGGGGACATCACATCGTGGTGGATTGGGTAAACTTTCAATCCGTGGAAGCAACTCAGATCGTGGGGTTACTAATCTTGGTCTCAAGGCAGTTGCTCGTGGATGCCCTTCTCTGAAGGCTTTCTCTCTGTGGAACGTTTCTACTGTTAGTGATGAAGGCTTGATCGAGGTTGCTGAGGGGTGTCAAAAGTTAGAGAAGCTTAACCTTTGCAAGTGCTCCGCAATTTCCGACAAGGCTTTAATTGAAGTCGCAAAGAAGTGCCCAAATCTGACCGAGTTGTCTATTGAGTCTTGCCCTCAAATTGGCAATGAAGGTCTACAAGCTGTGGGAAAGTTGTGTGCCAATCTAAGGTCGGTCTCAATCAAGGATTGCACCGGAGTCGGTGATCAGGGAATAGCTGGCCTGTTAACTTCTGCTTCCGTTGTTCTGAGAAAGGTGAAGCTCGAGTCGCTGGCTTTATCTGATCTCTCTCTGGCAGTTATCGGGCACTATGGATTTTCGGTCACAGATCTTGTCCTCAATTGCCTTCCAAATGTTAACGAGAAGGGTTTCTGGGTTATGGCCAATGGTCGTGCGCTGCAGAAACTTACGTCCCTCACAATCGGATCCTGCCGAGGTATAACAGATGCTGCTATTGTAGCTATTGGAAAGGGTTGTCCAAATGTGAGGAACTTCCGTCTCAGCAAGTGTGCATTTCTGTCGGACAACGGGTTGGTATCATTAACCAAGGCCGCTCCATCGATCGAGAGCCTACAATTGGAAGAGTGCCACAGGTTTACCCAATTTGGGTTTTTTGGTATCCTTTTTAACTGTGGTGCAAAATTGAAGGTTCTTAATGTCGTTAGCTGCTATGGAATTAAGGATCTGAATCTGGCACTGCCAGCTGGATCTCCTTGCTCCATTACCTCACTATCAATCCGTGACTGTCCTGGATTTGGAAATGCTAATCTTGCTGTGCTTGGGAGGCTTTGCCCACGTCTTAAGCATGTCGAATTGAGTGGACTGGCAGGAATAACTGACGCAGGGTTTCTTCCACTGCTTGAGAGCTCTGAGGCTGGTTTGGTTAAAGTTAACCTTAGCGGTTGCCTGAATCTGACTGACATAGTAGTTATCTCCTTGGCCAATTCACATGGCTGGACTCTTGAGGTGCTAAACCTTGATGGCTGCCGAAACATCACTGATGCCAGCTTAAAGGCAATTGCAGTCAATTGCCCCTTGCTCTCTGATCTCGACGTTTCCAAGTGCGCCATCACTGATGCCGGGGTTGCTGCCCTTGCCCGTGGCAAACAGCTCAATCTGGAGATCCTTTCTCTGTCATGTTGCTCTTCAGTATCAGAGAAGAGCTTGCCCGCGTTGAGGAAGCTTGGCAACAGCCTCACCGGACTGAACATCCAGCACTGCAGTGCAATCAGTGGCCGTGCAGTTGGCATGCTTGTTGAACATCTCTGGAGGTGTGACATCCTCTGTTGA 1929 0.4847 MSQVFGFSGGDDFCTGGSVYANPKDANIFLSLGRSVDFYYPLPKRSRISVSFDLDGDWFEQKQKTSIEALPDECLFEILRRLPAGQARSACANVSKRWLMLLSSISNSEICSNSNEKELSDKEGDDLEFGDGGFLSRSLEGKKASDVRLAAIAVGTSHRGGLGKLSIRGSNSDRGVTNLGLKAVARGCPSLKAFSLWNVSTVSDEGLIEVAEGCQKLEKLNLCKCSAISDKALIEVAKKCPNLTELSIESCPQIGNEGLQAVGKLCANLRSVSIKDCTGVGDQGIAGLLTSASVVLRKVKLESLALSDLSLAVIGHYGFSVTDLVLNCLPNVNEKGFWVMANGRALQKLTSLTIGSCRGITDAAIVAIGKGCPNVRNFRLSKCAFLSDNGLVSLTKAAPSIESLQLEECHRFTQFGFFGILFNCGAKLKVLNVVSCYGIKDLNLALPAGSPCSITSLSIRDCPGFGNANLAVLGRLCPRLKHVELSGLAGITDAGFLPLLESSEAGLVKVNLSGCLNLTDIVVISLANSHGWTLEVLNLDGCRNITDASLKAIAVNCPLLSDLDVSKCAITDAGVAALARGKQLNLEILSLSCCSSVSEKSLPALRKLGNSLTGLNIQHCSAISGRAVGMLVEHLWRCDILC 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03073 642 SMART LRR_CC_2 504 529 IPR006553 -
Aip08g03073 642 SMART LRR_CC_2 372 397 IPR006553 -
Aip08g03073 642 SMART LRR_CC_2 188 213 IPR006553 -
Aip08g03073 642 SMART LRR_CC_2 398 423 IPR006553 -
Aip08g03073 642 SMART LRR_CC_2 346 371 IPR006553 -
Aip08g03073 642 SMART LRR_CC_2 609 634 IPR006553 -
Aip08g03073 642 SMART LRR_CC_2 240 265 IPR006553 -
Aip08g03073 642 SMART LRR_CC_2 214 239 IPR006553 -
Aip08g03073 642 SMART LRR_CC_2 583 608 IPR006553 -
Aip08g03073 642 SMART LRR_CC_2 477 502 IPR006553 -
Aip08g03073 642 SMART LRR_CC_2 531 556 IPR006553 -
Aip08g03073 642 SMART LRR_CC_2 266 291 IPR006553 -
Aip08g03073 642 SMART LRR_CC_2 557 581 IPR006553 -
Aip08g03073 642 PANTHER UNCHARACTERIZED 16 633 - -
Aip08g03073 642 Pfam F-box domain 70 106 IPR001810 GO:0005515
Aip08g03073 642 Gene3D - 60 108 - -
Aip08g03073 642 PANTHER EIN3-BINDING F-BOX-LIKE PROTEIN 16 633 - -
Aip08g03073 642 Pfam Leucine Rich repeat 239 262 IPR001611 GO:0005515
Aip08g03073 642 Pfam Leucine Rich repeat 533 554 IPR001611 GO:0005515
Aip08g03073 642 Pfam Leucine Rich repeat 557 579 IPR001611 GO:0005515
Aip08g03073 642 SUPERFAMILY RNI-like 174 416 - -
Aip08g03073 642 Gene3D Ribonuclease Inhibitor 239 449 IPR032675 -
Aip08g03073 642 Gene3D Ribonuclease Inhibitor 450 501 IPR032675 -
Aip08g03073 642 SMART fbox_2 70 111 IPR001810 GO:0005515
Aip08g03073 642 Gene3D Ribonuclease Inhibitor 157 238 IPR032675 -
Aip08g03073 642 Gene3D Ribonuclease Inhibitor 502 641 IPR032675 -
Aip08g03073 642 SUPERFAMILY RNI-like 338 580 - -
Aip08g03073 642 SUPERFAMILY F-box domain 63 104 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03073 Aip-Chr8 120480316 120484133 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03073 K14515 - gmx:100820247 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03073 08 120480316 120484133 Aip08g03073 08 120480316 120484133 ECH
Aip06g03356 06 130325947 130329626 Aip08g03073 08 120480316 120484133 PCT