Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03001 ATGTGTAGTACTAACACTTCAGTACTTGGTTGCTTCAACCCTGATGCAAAATTCAACATGCTTGATCGAAACACTGCAAATTATCATCCTAGTATTTGGAAGGATTATTTCCTTCAATATGCTTCACAATCCATGGAATTTGATGATGAAACGAAGGCACAAATTGAAAAACTGAAGAAAGAAGTAGTCAAAATGCTTATTGATATCTCTAAACCCATTGAAGAAATAGTTAACTTGATTGATTTAATATGTCATTTGGGCATTCATTATCACTTTGAAAGCGAGATTGATGAAGTGCTGCAACAAATTCACAAGAATTATACAAAAAAAGGAGAAATAATAATTGTTGATGATAACCTTCGCTTACTTGCTTTGCTTTTTAGGTTATTAAGGCAACAAGGATATCACGTTTCACCAAATGTGTTCAACAAATACAAGGATGAGAATGGAAAGTTTAGTGAAAAACTTGTGAAGGATGTGGAGGGATTGCTAGAATTGTATGAAGCATGTCATCTCAGAATTCATGGAGAAGAGATATTAGATGAAGCTTATGCATTCACTTCCACTCAACTTAAATCCATTGCCACCCAATTGAAGCCTTCACTTGCAGCACAAGTCAATTATAGTTTAAAGCAATCTTTACACCGAGGTTTGCCGAGATTGGAGGCACGCCGTTTTATTTCAATATATGAACAAGATCCAACCCATAATCACACTCTCCTCACTCTTGCAAAATTAGATTTTAATTTCCTACAAAACTTGCATCGACAAGAAGTTGGCAACATTACCGAGTGGTGGAAGGAGCTTAATGTTGCTGTAAAACTACCATATGCTCGAGATAGAATTGTAGAATGTTGTAATTGGATTTTGGCGGTTTATTTTGAGCCTCAATATTCTCAAGCTAGGAAAATGTTGATAAAATTGATTGCTCTTATGTCAATTATTGATGATACATATGATGCCTATGGAACTATAGATGAACTAAAACTTTTCACCGAAGCAATTGAAAGGTGGGATATTAGCTCCTTGGATGATCTTCCAGAATACATGAAATTAATTTATGAGTCTCTCCTCAAAATTTTTGAAGAAGTAGAACGAGAACTTGAAAAACAAGGAAGAGCATATTGCATTAAATATTCCATTAAAGAACTTCAAAAGACAATTCAGGCCTATATGACTGAGGCCAAATGGTTGAATAACAAGTATATACCAACAATGGCAGAGTACATTCAGATATCAACAATATCATCTGCTTATCCATTCCTTGTGACAAGTTCTTACATTGGCATGGGAGATATCGCCGTAGAAGACATCTTCAAATGGGTAACAAGTAAACCCAAAATTGTTAGAGCTTCTACAATTATTTGCAGGTTTATGGATGACATTGTCTCTAATGAG 1398 0.3491 MCSTNTSVLGCFNPDAKFNMLDRNTANYHPSIWKDYFLQYASQSMEFDDETKAQIEKLKKEVVKMLIDISKPIEEIVNLIDLICHLGIHYHFESEIDEVLQQIHKNYTKKGEIIIVDDNLRLLALLFRLLRQQGYHVSPNVFNKYKDENGKFSEKLVKDVEGLLELYEACHLRIHGEEILDEAYAFTSTQLKSIATQLKPSLAAQVNYSLKQSLHRGLPRLEARRFISIYEQDPTHNHTLLTLAKLDFNFLQNLHRQEVGNITEWWKELNVAVKLPYARDRIVECCNWILAVYFEPQYSQARKMLIKLIALMSIIDDTYDAYGTIDELKLFTEAIERWDISSLDDLPEYMKLIYESLLKIFEEVERELEKQGRAYCIKYSIKELQKTIQAYMTEAKWLNNKYIPTMAEYIQISTISSAYPFLVTSSYIGMGDIAVEDIFKWVTSKPKIVRASTIICRFMDDIVSNE 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03001 466 CDD Terpene_cyclase_plant_C1 23 466 IPR044814 GO:0010333|GO:0016102
Aip08g03001 466 Gene3D Farnesyl Diphosphate Synthase 30 465 IPR008949 -
Aip08g03001 466 Coils Coil 381 401 - -
Aip08g03001 466 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 29 235 IPR008930 -
Aip08g03001 466 SFLD Isoprenoid Synthase Type I 236 463 - -
Aip08g03001 466 PANTHER OS04G0344100 PROTEIN-RELATED 20 466 - -
Aip08g03001 466 PANTHER TERPENE SYNTHASE 2-RELATED 20 466 - -
Aip08g03001 466 SUPERFAMILY Terpenoid synthases 236 465 IPR008949 -
Aip08g03001 466 Pfam Terpene synthase, N-terminal domain 32 210 IPR001906 GO:0010333|GO:0016829
Aip08g03001 466 Pfam Terpene synthase family, metal binding domain 241 465 IPR005630 GO:0000287|GO:0010333|GO:0016829
Aip08g03001 466 SFLD Terpene Cyclase Like 1 C Terminal Domain 236 463 IPR034741 -
Aip08g03001 466 Gene3D - 71 236 IPR036965 GO:0010333|GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03001 Aip-Chr8 118987467 119014466 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03001 - - adu:107463233 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03001 08 118987467 119014466 Aip08g03001 08 118987467 119014466 ECH