Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02988 ATGTCCAACAATCTGGTTTCGGAGCCGATGCCAAGCATGCAGATGGCTCAGTTGCAGCCAATTGTGACCAAAGTAGATTCTACGGCTGGACAGATGGATATGGGGTTATTGGCTTCTGTAACTGCTGATCCTACTCCACAGCAACGCGGAGGTGCAAATGATCATGTTGGATTGTTGAGAGATGGGTCTGGTGATCCCAGGTCTCGGGGCTTATCGAATTCAGCTATGCAGAGTGTTCGAGTAGAAGCACGAATGAGTAATATGGGTCCACAGCAACTGGTAACAACTCCCAAGCGGAAGGCACCAATGGAATTATCAACTGGTAGCTCTGTGACATCCAACAAAAGGGTTGCACAAGGGGGAAATAGACCTTGGTTGCAGCAAGCTTCTAATCTGTCGAATAAAGGTTCTGCGCAGATGCAATCCCCATCTAATGCCTCCCCCCGCCCTCAGCAATCGGCAGTCTCCAATAAGAGAAAAGTGCAGATGACTGAATCTGTTTCCAGTAAATCAAGTACGCCACGGTCCTCGAATTCTAAAAATCAGAATACGCAGATGAAGCAGCCATCCAAGGTTCAAACAGAATCTTCTGAAAGTGTTAGGTCCAAGATGAGGGAGTCATTAGCTGGTGCTCTGGCCTTGGTTTCTAAGCAAGATAAACCGACCCAGAACAATAACACAATGAATGATGCTGCTACTAATGGGAAATTAGAGAACAACTCTCAGTGGGATGGGTCAGCACCTGCACCCATTGATATTGCCCCAGAGCAAAGGCAAGATATTTCTGAATCTGCTCAGCCTTCTTTTTCTGCAGCTGGTTCAGTTGACCATGCAACAGGAGAGCAGAGAAATAATGCATCTTCTAGTGAAGATTTTTCTGAAAAATTCAAGGATTTTGAAATGGGATCTATAAATATATCAAATAATGAAAATATACTCGGGTTGAACTGTGATAAGCAAGACTTCCAGTCAGATTACACTTTGACTACTGATGATGTTCCATTCAGCGACAGTTTTTTTGTGAAAGATGATCTTTTGCAGGGTAATGGTCTTTCATGGGTATTATCTGATGTGGTAGGCATGGACAATCAAAAGGAAAGTCAAAATATTATAGAGCAGAGACCAGAACCCGAGGAACGATTACCTGAAGTTTTAGCATCAAGGATAGAAGAAGAACTTTTCAAATTGTTTGGAGGTGTGAATAAGAAGTACAAAGAGAAGGGGAGGTCTCTCCTATTCAATTTGAAGGATAGAAATAATCCAGAACTAAGAGAAAAGGTTATGTCGGGTGACATTCGTCCCGAACAATTGTGTTCCATGACAGCAGAGGAACTTGCTTCAAAGGAACTCTCCCAATGGCGGATAGCCAAGGCTGAAGAGCTTGCTCAAATGGTGGTTTTACCTGATTCAGATGTTGATATTAAGAGGTTAGTCAAGAAAACACATAAAGGTGAGTTTCAGGTGGAAGTTGAACATGAAGATAACGTTCCCATTGAGGAGATCTCCAGTGGCACCACATCTTCTAGAAGTCTAACAAGTAGAAAAGGTGGGGAAGCCAGGAGTCAAAAAACTAAAAAAAGTGGGGAGGCCACTTCTTCCAAATCTGCTGTGGTCAAAGAAAATAAAAACACGGATGGTGAGAAGAGCAATTCAGAGAAGGATAATGCATTTTCCATTACCATTTCATCCAACGATGGGACTGATCCAATGCAAGGCCTTATGACAGATGATGCACTGAAGGATCCCGACTTTCTTCCACCAATTGTCTCTCTTGATGAATTCATGGAATCCCTTCATTCTGAGCCACCATTTGAAAATTTACCGATGGAATCAGGTAAAGAAGCTCCTGAATCGAACAAGGACGATTCCAAGGTTGGATCTAAATCAAAATCTTTGGATATTACCCCAAGGGAGCAAGCTGGTGTCACCCCTGATAAATCTGAAAATCTAGATGCCAAAGGTGAAAAACTGGTTAATGCAGAATCTGGGTCTACTTCTGATAGACGTTGCAATGAGAGCGAAGCTGGCGTGAAGCCAACTGATGATCATGCAAAGGAAAGGTTAACGGATAACAAGAAGAATGCTTCTGTTGATGCTGAGCTGAGAACAAGTAATTTTAATGCTGAAGAGCGACATGGCAATAATAGCTTGTATGCAAAAACTGCAGTACATACTAAGGGTGAATGCTTCTGGGACGGAATGCTTCAACTGAATATATCTACGACTGATTCAGTAATAAGCATATTTAAAAGTGGTGAGAAAACTACTGCAAAAGACTGGCCTGGTTTTCTTGAGATCAAGGGAAGGGTTCGACTTGAAGCATTTGAGAAATTTTTGCAAGAGCTTCCTCAGTCAAGAAGTCGTGCTATAATGGTATCTCAAGTTTCTTCTTGTTGTACTAAATTAGTACTTGTGGCTGAATCTTATATTACGGATGAGAGAGTGGGATTTGCTGAGCCTGTGTCTGGAGTTGAACTTTACTTTTGCCCACCTCATAACAAAACAGTTGAAATGCTGAGCAAGATACTTCCAAAGGAACAAATTGAGGCAGTTAATTCTATTGATAATGGCCTAATTGGTATTATTGTATGGAGAAAAACTAATTTAATTTCGTCAACAATTTCACCCACCGCTTCATCACAACACAAACATAGTAGTAGTAGTAGCTCTAAAAGGCAACAATACTTCTCTAGGAGACAGCAAGATGGTAGTAGTAATTTGAATGTGAATGTTGCTAATCCCTCTAATCCACCACCGAATGGTGTTGATGATGATGATGATGACATTCCTCCTGGGTTTGGGCCTCATCAGGCCCGGCCCGAGGATGACCTACCTGAGTTCAGTTTCATGGGTGGTCCAAACACATCATCACACATGGTCCAAAGACCTAGGGGACCACCAGGTATGGTTCCATTCCAAATGGTTAACCAGGCCCCATCACGCCCTGTTGATCAAATGAGGGAGCTTGTGCACAAATATGGTCAAAGCAAAGTAAATTCACATCATTCAGGAAATTGGCAAGACAAATTTGGTGGTTCAATCCAACCTTGGAATGATGATGATGATGATATACCTGAATGGCAGCCGCAAAACTCACAACAGAACCACCAGTTCCCACCACCACCACCACCCCAATTGGCATTGCACCAACAAAACTTTCACCTTAGACCTCACTTGATGAATCAATCTTTCCCAGGTTCACCGACTCTGCCAACACCACCACATCTTCAACCACCTATGAATGTGACACATGGCCAAAGAAATATTGGTCCAAATTGGGTTCCTCCTAACCAGGGAAACAACCACCTGCAACCAAGTGGTGGACAGCACTATGGTGCTCCTATGCAAGGCACGTGGCCTGAAAATGTTACTAGAAGTAGGGGATTTTAG 3390 0.428 MSNNLVSEPMPSMQMAQLQPIVTKVDSTAGQMDMGLLASVTADPTPQQRGGANDHVGLLRDGSGDPRSRGLSNSAMQSVRVEARMSNMGPQQLVTTPKRKAPMELSTGSSVTSNKRVAQGGNRPWLQQASNLSNKGSAQMQSPSNASPRPQQSAVSNKRKVQMTESVSSKSSTPRSSNSKNQNTQMKQPSKVQTESSESVRSKMRESLAGALALVSKQDKPTQNNNTMNDAATNGKLENNSQWDGSAPAPIDIAPEQRQDISESAQPSFSAAGSVDHATGEQRNNASSSEDFSEKFKDFEMGSINISNNENILGLNCDKQDFQSDYTLTTDDVPFSDSFFVKDDLLQGNGLSWVLSDVVGMDNQKESQNIIEQRPEPEERLPEVLASRIEEELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELREKVMSGDIRPEQLCSMTAEELASKELSQWRIAKAEELAQMVVLPDSDVDIKRLVKKTHKGEFQVEVEHEDNVPIEEISSGTTSSRSLTSRKGGEARSQKTKKSGEATSSKSAVVKENKNTDGEKSNSEKDNAFSITISSNDGTDPMQGLMTDDALKDPDFLPPIVSLDEFMESLHSEPPFENLPMESGKEAPESNKDDSKVGSKSKSLDITPREQAGVTPDKSENLDAKGEKLVNAESGSTSDRRCNESEAGVKPTDDHAKERLTDNKKNASVDAELRTSNFNAEERHGNNSLYAKTAVHTKGECFWDGMLQLNISTTDSVISIFKSGEKTTAKDWPGFLEIKGRVRLEAFEKFLQELPQSRSRAIMVSQVSSCCTKLVLVAESYITDERVGFAEPVSGVELYFCPPHNKTVEMLSKILPKEQIEAVNSIDNGLIGIIVWRKTNLISSTISPTASSQHKHSSSSSSKRQQYFSRRQQDGSSNLNVNVANPSNPPPNGVDDDDDDIPPGFGPHQARPEDDLPEFSFMGGPNTSSHMVQRPRGPPGMVPFQMVNQAPSRPVDQMRELVHKYGQSKVNSHHSGNWQDKFGGSIQPWNDDDDDIPEWQPQNSQQNHQFPPPPPPQLALHQQNFHLRPHLMNQSFPGSPTLPTPPHLQPPMNVTHGQRNIGPNWVPPNQGNNHLQPSGGQHYGAPMQGTWPENVTRSRGF 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02988 1129 MobiDBLite consensus disorder prediction 36 291 - -
Aip08g02988 1129 Gene3D - 354 448 IPR036575 GO:0006351
Aip08g02988 1129 MobiDBLite consensus disorder prediction 497 579 - -
Aip08g02988 1129 MobiDBLite consensus disorder prediction 553 570 - -
Aip08g02988 1129 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 71 1116 - -
Aip08g02988 1129 Pfam Transcription factor S-II (TFIIS), central domain 369 461 IPR003618 GO:0006351
Aip08g02988 1129 MobiDBLite consensus disorder prediction 997 1012 - -
Aip08g02988 1129 SUPERFAMILY Elongation factor TFIIS domain 2 378 449 IPR036575 GO:0006351
Aip08g02988 1129 MobiDBLite consensus disorder prediction 259 287 - -
Aip08g02988 1129 MobiDBLite consensus disorder prediction 102 197 - -
Aip08g02988 1129 MobiDBLite consensus disorder prediction 614 628 - -
Aip08g02988 1129 MobiDBLite consensus disorder prediction 1096 1129 - -
Aip08g02988 1129 MobiDBLite consensus disorder prediction 600 696 - -
Aip08g02988 1129 MobiDBLite consensus disorder prediction 875 966 - -
Aip08g02988 1129 Pfam SPOC domain 726 864 IPR012921 -
Aip08g02988 1129 MobiDBLite consensus disorder prediction 217 246 - -
Aip08g02988 1129 MobiDBLite consensus disorder prediction 499 515 - -
Aip08g02988 1129 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 71 1116 - -
Aip08g02988 1129 SMART mid_6 362 456 IPR003618 GO:0006351
Aip08g02988 1129 MobiDBLite consensus disorder prediction 667 696 - -
Aip08g02988 1129 MobiDBLite consensus disorder prediction 67 94 - -
Aip08g02988 1129 MobiDBLite consensus disorder prediction 997 1048 - -
Aip08g02988 1129 MobiDBLite consensus disorder prediction 875 917 - -
Aip08g02988 1129 ProSiteProfiles TFIIS central domain profile. 359 473 IPR003618 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02988 Aip-Chr8 118698642 118703342 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02988 - - gmx:100808809 1316.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g02988 08 118698642 118703342 Aip08g02988 08 118698642 118703342 ECH