Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02953 ATGGCAAGAAAGGAGAGAGCAGAGGGAGAGAGAAAGAGAAGAGAGGAACGGAGCCGTTCTCGTCGCCACACCCCTGCCCTTGTCGCGATTCGCAGCGCCTCCTCGTCGCGATTTGCAATTCGCCACCACCGCATCGCCATTTTCGTCGCAATTCGCTGCGTCGCCACCACTACTGTAGCCCTTTCCACGCGATCCGCCACCACCACCGCAGCTCTCCTCCCCTCGCGATTCGCAGTTCACCGCAGTAGCCCCTCCTCCCCTACCACCACCGTAGCCCTTTTCCTTGCGATTCGCAGATCACCTGCTCTCCCTCAAGTTGATTACCCCAGCTTCAAGCTCGTTATCGTCGGCGATGGTGGAACAGGAAAGACTACATTTGTGAAGAGACATCTTACTGGTGAATTTGAGAAGAAATATGAACCAACTATTGGTGTGGAGGTCCACCCTTTGGATTTTTTCACAAACTGTGGGAAGATTCGTTTCTATTGCTGGGATACTGCTGGCCAAGAAAAGTTTGGTGGTTTGAGAGATGGATATTATATCCATGGGCAATGTGCGATAATTATGTTTGATGTCACTGCTCGGTTGACATACAAAAATGTCCCTACCTGGCACCGTGATCTTTGCAGAGTCTGTGAAAACATCCCAATTGTTCTCTGTGGTAACAAGGTTGATGTGAAGAACAGGCAAGTAAAGGCAAAACAGGTTACCTTCCACAGGAAGAAGAATTTGCAATACTATGAAATATCAGCCAAGAGCAACTATAACTTCGAGAAGCCTTTCCTTTACCTTGCCAGGAAGCTTGCAGGTGATCCCAACTTGCACTTTGTAGAATCACCTGCACTGGCTCCTCCAGAAGTTCAAATCGATTTGGCCGCACAGCAACAGCATGAAGCTGAGCTTGTTCAAGCTGCTAACCAGCCACTTCCGGATGATGATGATGACACATTTGAGTAA 957 0.4911 MARKERAEGERKRREERSRSRRHTPALVAIRSASSSRFAIRHHRIAIFVAIRCVATTTVALSTRSATTTAALLPSRFAVHRSSPSSPTTTVALFLAIRRSPALPQVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELVQAANQPLPDDDDDTFE 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02953 318 ProSiteProfiles small GTPase Ran family profile. 104 268 IPR002041 GO:0003924|GO:0005525|GO:0006913
Aip08g02953 318 TIGRFAM small_GTP: small GTP-binding protein domain 111 261 IPR005225 GO:0005525
Aip08g02953 318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 291 IPR027417 -
Aip08g02953 318 SMART ran_sub_2 116 317 - -
Aip08g02953 318 CDD Ran 111 276 - -
Aip08g02953 318 Pfam Ras family 112 268 IPR001806 GO:0003924|GO:0005525
Aip08g02953 318 SMART rab_sub_5 111 271 - -
Aip08g02953 318 SMART rho_sub_3 113 267 IPR001806 GO:0003924|GO:0005525
Aip08g02953 318 MobiDBLite consensus disorder prediction 1 23 - -
Aip08g02953 318 Gene3D - 104 316 IPR027417 -
Aip08g02953 318 SMART ras_sub_4 108 271 - -
Aip08g02953 318 MobiDBLite consensus disorder prediction 1 24 - -
Aip08g02953 318 ProSiteProfiles small GTPase Ras family profile. 104 303 IPR001806 GO:0003924|GO:0005525
Aip08g02953 318 ProSiteProfiles small GTPase Rab1 family profile. 105 318 - -
Aip08g02953 318 PANTHER GTP-BINDING NUCLEAR PROTEIN 92 318 - -
Aip08g02953 318 PANTHER RAN GTPASE 92 318 IPR002041 GO:0003924|GO:0005525|GO:0006913
Aip08g02953 318 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 227 245 IPR002041 GO:0003924|GO:0005525|GO:0006913
Aip08g02953 318 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 265 287 IPR002041 GO:0003924|GO:0005525|GO:0006913
Aip08g02953 318 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 191 212 IPR002041 GO:0003924|GO:0005525|GO:0006913
Aip08g02953 318 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 171 189 IPR002041 GO:0003924|GO:0005525|GO:0006913
Aip08g02953 318 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 124 138 IPR002041 GO:0003924|GO:0005525|GO:0006913
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02953 Aip-Chr8 117977848 117983263 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02953 K07936 - rcu:8278571 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g02953 08 117977848 117983263 Aip08g02953 08 117977848 117983263 ECH