Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02943 ATGGCCGTTCCCTTCTTCACAACAACATTTGTTCCATCTCTTTCCTCAAAAACCATCACTCCCATCACTCCTTCAAAGTCCACAATAGCCTTCATTCGCTTCCTCACATTCTCAACAATGAACTCATCGCCATCACCGTCATCACCATCGATCTACCACGTGCCAGACCTAGGTGCCAACGACATGGACCGTGTGGCAGACCACACTTTCCGAACCTACACTTCGAATAACAATGCAAATGTGGCCAAGAGAAGTGGTAAAGGTTCGGCAATTGTGTGGTTCAGAAATGATCTGAGGGTGTTAGACAATGAAGTTCTCTACAAAGCGTGGCTCTCTTCGGAAACTGTCTTACCCGTTTTCTGTGTTGATCCTCGCCTCTTTTCCACCACTTACCACTTTGGTTTTCCCAAAACTGGAGCATTGAGAGCTCAATTTTTCGTCGAATGCTTGGCCGACTTGAGGAAGAACTTGACAAAATTCGGACTTAATTTGCTTATACAACACGGAAAGCCTGAAGATATTCTTCCTTCTCTAGCTAAAGCTTTCAAAGCTCATACAGTGTATGCCCAGAAAGAAACCTGCAGTGAGGAGCTGAACGTTGAAAGATTAGTCAGCAAAGGTCTTCGACAAGTAGCAATGCCATCCGGGGAATCTAGTAGTTCAACGAATTCAAACAACTTCCCCAAGTTACAATTGATTTGGGGTACCACCTTGTACCACATAGATGACCTTCCTTTTGATGCCGGTAGTTTGCCGGACACTGTCGAGGCGAAGTGTTCGATACGTCCGTGCATCAAACTTCCTGTGTTGCTTGGACCTCCTCCACTTGTTGAGGATTGGGGGTGTGTTCCTTCATTAGAGAAGCTGGGACTTAGCTCACAGAATGTTAGCAAGGGGATGAAATTTGTAGGAGGTGAAACTGCGGCGTTGAGCAGAGTATATGAATACTTTTGGAAGAAGGATTTGCTAAAGGTATATAAAGAGACCAGAAATGGAATGTTAGGACCTGATTACTCCACTAAGTTCTCACCATGGCTTGCATTTGGAAGCTTGTCTCCTCGTTTAATACACGAAGAGGTGAAGAGATATGAGAAGGAAAGGATAGCAAATGGTTCTACATACTGGGTCTTGTTTGAGTTGATATGGAGGGATTACTTCCGGTTTTTATCGGTGAAATATGGGAATTCAATTTTCTATTTAGGTAATTTGCTGAAGTCTGTTATGCGAGAGACGGCCGTACCGGGTACAGCTTCTATCGACACAATATATCCTTTGATTGATGCCAATATGAAAGAACTATCAACAACAGGGTTTATGTCAAACCGAGGACGGCAGATTGTGTGTTCATTTCTTGTTCGTGATATGGGCATAGATTGGCGAATGGGAGCAGAGTGGTTCGAGACGTGTCTTCTGGATTATGATCCATGTTCTAATTATGGAAACTGGACTTATGGTTCAGGAGTTGGGAATGATCCAAGAGAAGATCGATATTTCAGCATTCCGAAACAAGCACAAACATATGATCCGGAAGGAGAATACGTTGCATACTGGTTGCCGCGATTACAAACAATTCCGAAAGAGAAAAGGAACTTTCCTGGAAATTTATACATCCGTCAAATTGTGCCTCTCAAGTATGGTAGACTCCAGAATGACGGCGCAAGAAGCAGCAATGATAGAAGGAATGACAGAAGATGGAACAGGAACTAA 1707 0.4359 MAVPFFTTTFVPSLSSKTITPITPSKSTIAFIRFLTFSTMNSSPSPSSPSIYHVPDLGANDMDRVADHTFRTYTSNNNANVAKRSGKGSAIVWFRNDLRVLDNEVLYKAWLSSETVLPVFCVDPRLFSTTYHFGFPKTGALRAQFFVECLADLRKNLTKFGLNLLIQHGKPEDILPSLAKAFKAHTVYAQKETCSEELNVERLVSKGLRQVAMPSGESSSSTNSNNFPKLQLIWGTTLYHIDDLPFDAGSLPDTVEAKCSIRPCIKLPVLLGPPPLVEDWGCVPSLEKLGLSSQNVSKGMKFVGGETAALSRVYEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGSLSPRLIHEEVKRYEKERIANGSTYWVLFELIWRDYFRFLSVKYGNSIFYLGNLLKSVMRETAVPGTASIDTIYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPRLQTIPKEKRNFPGNLYIRQIVPLKYGRLQNDGARSSNDRRNDRRWNRN 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02943 568 MobiDBLite consensus disorder prediction 553 568 - -
Aip08g02943 568 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 413 549 - -
Aip08g02943 568 Pfam DNA photolyase 90 255 IPR006050 -
Aip08g02943 568 PANTHER CRYPTOCHROME DASH 79 545 - -
Aip08g02943 568 Gene3D - 236 398 - -
Aip08g02943 568 TIGRFAM crypto_DASH: cryptochrome, DASH family 90 520 IPR014133 GO:0003913|GO:0006281
Aip08g02943 568 MobiDBLite consensus disorder prediction 549 568 - -
Aip08g02943 568 Gene3D HUPs 49 235 IPR014729 -
Aip08g02943 568 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 88 221 IPR006050 -
Aip08g02943 568 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 300 534 IPR036134 -
Aip08g02943 568 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 88 279 IPR036155 -
Aip08g02943 568 Pfam FAD binding domain of DNA photolyase 379 529 IPR005101 -
Aip08g02943 568 PANTHER CRYPTOCHROME 79 545 IPR002081 -
Aip08g02943 568 PRINTS DNA photolyase signature 441 459 IPR002081 -
Aip08g02943 568 PRINTS DNA photolyase signature 480 494 IPR002081 -
Aip08g02943 568 PRINTS DNA photolyase signature 421 437 IPR002081 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02943 Aip-Chr8 117831047 117836364 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02943 K25656 - gmx:100783312 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g02943 08 117831047 117836364 Aip08g02943 08 117831047 117836364 ECH