Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01589 ATGATGTTTGTGGTGATTTTGTCTTCAGATCCTCTGCTGGTGAAGGCTGCCAGAGGAGAACCTGTTAGTCGGCCACCAGCATGGATGATGCGCCAGGCGGGAAGGTACATGGCTGTTTACAGAAAGCTTGCTGAGAAATATCCATCCTTTCGAGAGAGGTCGGAGACAACTGATCTCATTGTGGAAATTTCTTTGCAGCCTTGGAATGCCTTTAGGCCTGATGGAGTGATCATTTTCTCTGACATCCTTACGCCTCTTCCTGCATTTGGGGTCGAATTCGACATTGAAGATGTAAGGGGTCCTGTTATTCAGTCCCCAATACGCTCCGAGGAGGGATTAAAGGCTCTGCATCCAATTGACCTGGAAAAGCTCAGTTTTGTTGGAGATTCACTCAAGATACTGCGCAGGGAGGTTGGTGGTGATGCTGCCGTTTTAGGTTTCGTGGGAGCACCTTGGACAATAGCAACATATATAGTGGAAGGGGGTACGACACGCACCTATACAACCATTAAGAGTATGTGCCATACAGCGCCACATTTATTGCGGACTCTACTCTCTCATTTGGCGCAAGCAATAGCAGATTATGTTGTTTTCCAAGTGGAGTCTGGGGCTCACTGCATACAAATATTTGATTCATGGGGTGGACAACTACCACCTGATATGTGGGAACGCTGGTCAAAGCCTTATATCAAAGAGATTGTAGATTTGGTCAAGAAAAGATGCCCCGAGACACCGATTGTTCTTTATATAAATGGAAATGGTGGCCTCCTTGAGCGTATGAAAGATACTGGAGTTGATGTTATTGGCCTGGACTGGACTGTGGATATGGCAGATGGAAGAAGAAGATTGGGTAGTGGAATAGGTGTGCAGGGAAATGTGGACCCTGCCTACTTATTCTCCCCACTTCCTGCCCTCGCTGAAGAAATTCAGAGGGTTGTGAGGTGTGCCGGGCCTAGACGGCACATCCTTAATCTCGGGCATGGTGTTCTTGTTGGCACACCTGAAGAAGCTGTTGCACATTTCTTTGAAGTTGCTAGGAGCTTGAAGTTTGATACACTTTTTCAAAACAAATCTGCAGAAGATCCTAGATTGGTAGCTTAA 1101 0.4659 MMFVVILSSDPLLVKAARGEPVSRPPAWMMRQAGRYMAVYRKLAEKYPSFRERSETTDLIVEISLQPWNAFRPDGVIIFSDILTPLPAFGVEFDIEDVRGPVIQSPIRSEEGLKALHPIDLEKLSFVGDSLKILRREVGGDAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHLLRTLLSHLAQAIADYVVFQVESGAHCIQIFDSWGGQLPPDMWERWSKPYIKEIVDLVKKRCPETPIVLYINGNGGLLERMKDTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPAYLFSPLPALAEEIQRVVRCAGPRRHILNLGHGVLVGTPEEAVAHFFEVARSLKFDTLFQNKSAEDPRLVA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01589 366 SUPERFAMILY UROD/MetE-like 12 348 IPR038071 -
Aip08g01589 366 Gene3D - 5 350 IPR038071 -
Aip08g01589 366 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 6 361 - -
Aip08g01589 366 Hamap Uroporphyrinogen decarboxylase [hemE]. 9 349 IPR006361 GO:0004853|GO:0006779
Aip08g01589 366 Pfam Uroporphyrinogen decarboxylase (URO-D) 12 347 IPR000257 GO:0004853|GO:0006779
Aip08g01589 366 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 145 161 IPR000257 GO:0004853|GO:0006779
Aip08g01589 366 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 1, CHLOROPLASTIC 6 361 - -
Aip08g01589 366 CDD URO-D 15 347 IPR006361 GO:0004853|GO:0006779
Aip08g01589 366 TIGRFAM hemE: uroporphyrinogen decarboxylase 13 346 IPR006361 GO:0004853|GO:0006779
Aip08g01589 366 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 26 35 IPR000257 GO:0004853|GO:0006779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01589 Aip-Chr8 28399942 28403087 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01589 K01599 - gmx:100807032 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01589 08 28399942 28403087 Aip08g01589 08 28399942 28403087 ECH