Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01540 ATGATTATATCTGTACTTCCGTTTTTGATTGTTCAATTACCACAACTTCTCCATTCATCATCAGGAAGGCACTTGGCTGTTTTGATTGCTCTTATTGTCTCTTTGTTGTTACTAGCTTCTTATTGCTTTTATCAGGTTTTCCAACCCTGGATACAGAGGAGGAAACTTGAATATGTTAGGCACAAGCATGTTATTCTAGGACTTTTGAGACATTTGAAGCAGCGTGCATTGGGAAGGCTGCTCAAAGAAAACGGTGAACCTGACAGAGAAATTATTAGAAAGTTGTTTACAACAATCGATGAAAACAGTGATGGGAATCTTACTCATGGTGAATTGAGGGCACTAGTTGTTGGAATTCAATTTGAGGAAGTTGACCTGGATCATGATGATGCCGTAAAAAGAATAATGAATGACTTTGATACTTCACGCAATGAACTTGTAGATGAAGAAGAATTTGTTAATGGCGTCTGTAGATGGCTTGACAGAGCCAGGGGTTCTCGACCTGCGTCTGGTGATGCTGGCCCCCACACAGTGAAATTTTTAAGCAATTTTCACAATGAAACAAAGAGGGAACATGATCTCCTGGATGTGAGTGGTCAAAATGAAGAAGTTTCTGAAGGTGTTGAGAAATCAAAATGGACTACAGTCAAGTCATTGCTGTTTTTATTACTGGGAACTGTTATCGCTGCTGCATTCGCTGATCCTCTGGTTGATGCAGTCGACAACTTTTCCGATGCTACAAGTATTCCTGCTTTCTTCATTTCTTTTATTGCTCTGCCTTTGGCAACCAATTCAAGCGAAGCAGTTTCGGCAATTATTTTCGCTAGTCGCGATAAGAGACAAACTGCCTCATTAACATTTTCAGAGATATATGGTGCAGTGACAATGAACAATGTGCTATGCCTATCAGTGTTCTTAGCATTGGTCTATGTAAGAGGATTGACATGGGATTTCTCTTCAGAAGTTTTGGTGATTCTTGTTGTTTGCATTGTGATGGGTGTACTTGGCAGCTTCCGTACATGCTTCCCTCTATGGACAGCCATAATAGCTATCCTCCTTTACCCTTTCACCCTGGCATTAGTCTATGTTCTTGATTATGTCTTTGGTTGGTCATAG 1116 0.4032 MIISVLPFLIVQLPQLLHSSSGRHLAVLIALIVSLLLLASYCFYQVFQPWIQRRKLEYVRHKHVILGLLRHLKQRALGRLLKENGEPDREIIRKLFTTIDENSDGNLTHGELRALVVGIQFEEVDLDHDDAVKRIMNDFDTSRNELVDEEEFVNGVCRWLDRARGSRPASGDAGPHTVKFLSNFHNETKREHDLLDVSGQNEEVSEGVEKSKWTTVKSLLFLLLGTVIAAAFADPLVDAVDNFSDATSIPAFFISFIALPLATNSSEAVSAIIFASRDKRQTASLTFSEIYGAVTMNNVLCLSVFLALVYVRGLTWDFSSEVLVILVVCIVMGVLGSFRTCFPLWTAIIAILLYPFTLALVYVLDYVFGWS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01540 371 ProSiteProfiles EF-hand calcium-binding domain profile. 87 122 IPR002048 GO:0005509
Aip08g01540 371 SMART efh_1 91 119 IPR002048 GO:0005509
Aip08g01540 371 SMART efh_1 131 159 IPR002048 GO:0005509
Aip08g01540 371 CDD EFh 92 156 IPR002048 GO:0005509
Aip08g01540 371 ProSitePatterns EF-hand calcium-binding domain. 100 112 IPR018247 -
Aip08g01540 371 SUPERFAMILY EF-hand 86 159 IPR011992 -
Aip08g01540 371 Gene3D - 44 166 - -
Aip08g01540 371 Pfam EF-hand domain pair 92 154 IPR002048 GO:0005509
Aip08g01540 371 PANTHER SODIUM/CALCIUM EXCHANGER NCL 2 368 - -
Aip08g01540 371 Pfam Sodium/calcium exchanger protein 218 362 IPR004837 GO:0016021|GO:0055085
Aip08g01540 371 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 2 368 IPR004713 GO:0006812|GO:0008324|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01540 Aip-Chr8 26520318 26525716 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01540 1 371 EF-hand Containing Proteins AT1G53210 67.292 2.77e-177 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01540 - - adu:107459761 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01540 08 26520318 26525716 Aip08g01540 08 26520318 26525716 ECH