Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01534 ATGGATGTGGACACAAGAAAGATGGCAAGAAACATGGTTTTCTCAGTGACACCACTGATTATAATGCAGATTACCAATTTGTTCCCAAACTCTTCCACACTGCGCAATGTGACATTAATGATTGCTTTTATTGTAGCTCTCATTTTCCTCATCTCATACTTCATTTACCAGGTATTCAAACCTCAGATAGAGAAAACAAGACTAGAGTATATAAAACATGATGATTTGATATTAAGAATATTGCAACGTGTTGAAAAGCAAACTCTGCAAAAGATTCTGGCTGAGGATGGCACTCCTAATGTTAATGCCATAAGTGGGCTATATCAAGAAATTAGTCAACATGAGGGCAAGGATTTATCAGCATCAGAAGTAAAAGAGTTACTACTCAAGAACAAATTATCAGACACAAACATCAAAGAGGAACAGATAGCAGACATGTTGAAGATTTTTGACAAAAATGGTGACCAAATTATAACCAAGGAAGAATTTGTTAGTGGCTTGACAGAATACATTAACCAAACAAAACATGCTTTGGATAGACAATACCTCCCAAAAGAATCACTCAACAAAGTGTATCAGACATTTATCAAGCCATGGATTGAACATGTGAGGAAAGAAAGAGAATTGAAGGGACATCTTGTATCTCAAGTCTTGAAGCATGTCCAGAGTGAGGATGTGGTTGGCAGGCTCCTTAATGATGATGGCACAGCTGATAAAGCCGCCATTAGAAGGCTATTTGAGGAAGTTGATGTCAATGGAGATAACCATGTTTCAAGATCTGAGCTAGAAAGAATAGTGAAGGATATCCATTTTAGTAAGGCTGTCGATGCGGAGGAGGCACTCTCGAAACTTGTTCAAGATCTTGATGTCAATAGAGACAATGAAATCAGTGAGAAAGAATTTGTTGATGGTTTCACAAAATGGATAAACTCAAATTCCAGCCAAGCTGCTAATTCAAAATCTTCATCTCATGGAACTCATCAAACATGGGAAGATGTTGAGAAGGTGATGGAACAAAACCAAAGCAAAGGAGCATCTGCATGGTTGGAGGCTATAGGATATGTGGTGTTGGGAATTACCATGTTGTCCCTTCTTGCAGAGCCACTCATAGCAAGTGTCCAGAACTTCTCTGAAGAAGCAGGACTTTCTTCTTTTTCCATCTCATTTATCTTGGTACCTCTGGCCACAAATTTCAGAGAAGCAACTGCAGCAATCAAAGAAGCTAGTCACAAGAAGAGCAGCAACACTTCTCAAACAATATATGAGATATATGGAGCAGTGTTCATGAACAACATTCTTGGATTTGTGGTGATATCTATTCTGATATATGTGAGGGACATAACTTGGGAATTCTCAGCAGATGTTCTTGTTGTGGCCATTGTTTGTGCTGTCATGGGGATTGCTGCTAGTTTCCGCACCACTTTCCCTCTTTGGACATCAATCCCTGCATACCTCTTATACCTCATCTCATTGCTCTTTGTTTTTGTTCTCAAAGATATCTTCAACTATGTTTAG 1515 0.3875 MDVDTRKMARNMVFSVTPLIIMQITNLFPNSSTLRNVTLMIAFIVALIFLISYFIYQVFKPQIEKTRLEYIKHDDLILRILQRVEKQTLQKILAEDGTPNVNAISGLYQEISQHEGKDLSASEVKELLLKNKLSDTNIKEEQIADMLKIFDKNGDQIITKEEFVSGLTEYINQTKHALDRQYLPKESLNKVYQTFIKPWIEHVRKERELKGHLVSQVLKHVQSEDVVGRLLNDDGTADKAAIRRLFEEVDVNGDNHVSRSELERIVKDIHFSKAVDAEEALSKLVQDLDVNRDNEISEKEFVDGFTKWINSNSSQAANSKSSSHGTHQTWEDVEKVMEQNQSKGASAWLEAIGYVVLGITMLSLLAEPLIASVQNFSEEAGLSSFSISFILVPLATNFREATAAIKEASHKKSSNTSQTIYEIYGAVFMNNILGFVVISILIYVRDITWEFSADVLVVAIVCAVMGIAASFRTTFPLWTSIPAYLLYLISLLFVFVLKDIFNYV 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01534 504 Gene3D - 98 178 - -
Aip08g01534 504 Gene3D - 179 321 - -
Aip08g01534 504 ProSiteProfiles EF-hand calcium-binding domain profile. 276 311 IPR002048 GO:0005509
Aip08g01534 504 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 184 - -
Aip08g01534 504 SMART efh_1 241 269 IPR002048 GO:0005509
Aip08g01534 504 SMART efh_1 280 308 IPR002048 GO:0005509
Aip08g01534 504 SMART efh_1 142 170 IPR002048 GO:0005509
Aip08g01534 504 ProSitePatterns EF-hand calcium-binding domain. 250 262 IPR018247 -
Aip08g01534 504 ProSiteProfiles EF-hand calcium-binding domain profile. 138 173 IPR002048 GO:0005509
Aip08g01534 504 CDD EFh 242 306 IPR002048 GO:0005509
Aip08g01534 504 Pfam Sodium/calcium exchanger protein 352 495 IPR004837 GO:0016021|GO:0055085
Aip08g01534 504 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 346 503 - -
Aip08g01534 504 Pfam EF-hand domain pair 241 303 IPR002048 GO:0005509
Aip08g01534 504 ProSiteProfiles EF-hand calcium-binding domain profile. 237 272 IPR002048 GO:0005509
Aip08g01534 504 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 191 327 - -
Aip08g01534 504 ProSitePatterns EF-hand calcium-binding domain. 151 163 IPR018247 -
Aip08g01534 504 ProSitePatterns EF-hand calcium-binding domain. 289 301 IPR018247 -
Aip08g01534 504 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 346 503 - -
Aip08g01534 504 SUPERFAMILY EF-hand 116 309 IPR011992 -
Aip08g01534 504 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 191 327 - -
Aip08g01534 504 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 1 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01534 Aip-Chr8 26355845 26360809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01534 191 503 EF-hand Containing Proteins AT1G53210 39.039 2.89e-62 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01534 - - ahf:112771843 964.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01534 08 26355845 26360809 Aip08g01534 08 26355845 26360809 ECH