Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01489 ATGTGGTTGTGCAGGTACAAGCATGTAGAAGATGCAGAAACTTTGTTTCGCAGCAAGGTGAATGAGCTTCCACCTGATATAAAGTCCTGGAACGTGATCCTCCATGGTTGGTGCATCTTAGGGAACACACATGAGGCAAAGAGGTTGTGGAAAGACATATTGGCATCTAAGTGCAAGCCAGATCTTTTCACTTATGCAACATTTATCAAGGCAATGACCAAGAAGGGGAAGCTTGGCACTGCACTGAGGTTGTTCCATGGCATGTGGGATAAAGGTTGCAAGCCCGATGTTGTGATATGCAACTGTATTGTTGATGCTCTTTGTTTCAAAAAGAGGGTTCCTGAGGCATTGGAAGTTTTCAAGTGCATGAGCGAAAGGGGTGTTGAACCTAATGTGGCTACTTACAACTCCTTGATCAAACACATGTGTAAGATTCGGCGAATGCAGAAGGTATATGAGCTAGTGAGTGATATGGAAAGGAGGGAGGGGAATTGTTTGCCTAATGCTGTTACTTATAGCTACTTGCTGGGTTCCTTGAAGGAGCCGAAGGAAGTTCCTGTGATTTTGGAGAGGATGGAGAGAAATGGGTGTAGCATGAATGATGATGTTTACAACTTGGTTTTGAGGTTGTACATGGAATGGGATGACCAGGATGGGGTGAGAAGAACATGGGAAGAGATGGAAAGGAATGGATGGGGACTAGATAGGCGATCTTATACAATCCTGATTCATGGGCACCTCAAAAGTGGGAGGACGAAGGATGCCTTGCGCTATTTTAGGGAGATGGTGTCTAAGGGAATGGAGCCTGAGCCAAGAACTGAGAAACTATTGAGTTCCATGAACATTCAGTCAAAAGAAAGAACAGAAAAACAAAAAGGATGA 882 0.4422 MWLCRYKHVEDAETLFRSKVNELPPDIKSWNVILHGWCILGNTHEAKRLWKDILASKCKPDLFTYATFIKAMTKKGKLGTALRLFHGMWDKGCKPDVVICNCIVDALCFKKRVPEALEVFKCMSERGVEPNVATYNSLIKHMCKIRRMQKVYELVSDMERREGNCLPNAVTYSYLLGSLKEPKEVPVILERMERNGCSMNDDVYNLVLRLYMEWDDQDGVRRTWEEMERNGWGLDRRSYTILIHGHLKSGRTKDALRYFREMVSKGMEPEPRTEKLLSSMNIQSKERTEKQKG 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01489 293 Pfam PPR repeat 238 266 IPR002885 -
Aip08g01489 293 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
Aip08g01489 293 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 61 95 IPR002885 -
Aip08g01489 293 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 161 IPR002885 -
Aip08g01489 293 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 292 - -
Aip08g01489 293 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 1 292 - -
Aip08g01489 293 MobiDBLite consensus disorder prediction 267 293 - -
Aip08g01489 293 Pfam PPR repeat family 95 144 IPR002885 -
Aip08g01489 293 Pfam PPR repeat family 25 73 IPR002885 -
Aip08g01489 293 Gene3D Tetratricopeptide repeat domain 183 292 IPR011990 GO:0005515
Aip08g01489 293 Gene3D Tetratricopeptide repeat domain 77 182 IPR011990 GO:0005515
Aip08g01489 293 TIGRFAM PPR: pentatricopeptide repeat domain 98 132 IPR002885 -
Aip08g01489 293 TIGRFAM PPR: pentatricopeptide repeat domain 29 61 IPR002885 -
Aip08g01489 293 TIGRFAM PPR: pentatricopeptide repeat domain 238 269 IPR002885 -
Aip08g01489 293 TIGRFAM PPR: pentatricopeptide repeat domain 63 97 IPR002885 -
Aip08g01489 293 TIGRFAM PPR: pentatricopeptide repeat domain 134 168 IPR002885 -
Aip08g01489 293 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 26 60 IPR002885 -
Aip08g01489 293 Gene3D Tetratricopeptide repeat domain 1 76 IPR011990 GO:0005515
Aip08g01489 293 SUPERFAMILY TPR-like 3 265 IPR011990 GO:0005515
Aip08g01489 293 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 130 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01489 Aip-Chr8 25114553 25118498 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01489 3 292 Glycosyltransferase AT1G05670 25.926 1.51e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01489 - - ahf:112769232 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01489 08 25114553 25118498 Aip08g01489 08 25114553 25118498 ECH